PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004507863.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | AP2 | ||||||||
Protein Properties | Length: 522aa MW: 57016.5 Da PI: 9.1276 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46.1 | 1.2e-14 | 153 | 212 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +++Aa+a++ a++k++g XP_004507863.1 153 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEDKAARAYDLAALKYWG 212 57*******************666664477446**********99*************98 PP | |||||||
2 | AP2 | 47.2 | 5.5e-15 | 255 | 306 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_004507863.1 255 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 306 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.24E-22 | 153 | 222 | No hit | No description |
Pfam | PF00847 | 9.1E-12 | 153 | 212 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-17 | 153 | 222 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.3E-29 | 154 | 226 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.927 | 154 | 220 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-15 | 154 | 222 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-6 | 155 | 166 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-18 | 255 | 316 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.8E-10 | 255 | 306 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.30E-25 | 255 | 316 | No hit | No description |
SMART | SM00380 | 1.5E-33 | 256 | 320 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.045 | 256 | 314 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-18 | 256 | 315 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-6 | 296 | 316 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0040019 | Biological Process | positive regulation of embryonic development | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 522 aa Download sequence Send to blast |
MDSSSSSPPN TLAFSLSNHF PIPSPSHSHL SLFHSFTTYP PSTPSLTLTG SNTVEPSPEA 60 KATNGGTTNL SIFTGEHKFE DFLGSSVATT RSTASTCAPT QLPQFSSDSD LYDSELKKTI 120 AACFPRGFTT EPNSVPQKPS PKKTVDTFGQ RTSIYRGVTR HRWTGRYEAH LWDNSCRREG 180 QSRKGRQVYL GGYDKEDKAA RAYDLAALKY WGPTTTTNFP TSNYEKELEE MKNMTRQEFV 240 ASLRRKSSGF SRGASIYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA 300 AIKFRGLNAV TNFDMSRYDV KSIANTSLPI GGLSNKNKNP TDSVSESKCH QEASKSDERN 360 PSSSTTTTTF TLSQQPSSTS TTLNFALPIK QDPSSDYWSI LGFHNNNHSV VVPSANNHNT 420 PFNMDFSVAP SNTNNAMFFS GSTNFVQQQN GNGSGSSGGS SSSSSSTSSI PFATPIFSLN 480 SNNTSYENGS NYGNWIGVGP SLHTFQTHAK PSLFQTPIFG ME |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004507863.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004507863.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 isoform X2 | ||||
Swissprot | Q6PQQ3 | 1e-152 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A1S2YPF4 | 0.0 | A0A1S2YPF4_CICAR; AP2-like ethylene-responsive transcription factor AIL5 isoform X2 | ||||
STRING | XP_004507863.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-138 | AINTEGUMENTA-like 5 |
Publications ? help Back to Top | |||
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