PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004507812.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family CO-like
Protein Properties Length: 384aa    MW: 42144.2 Da    PI: 6.1693
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004507812.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.49.1e-062263338
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                    ++ C+ ++   + lfC++ + +lC +C + +H        H+
  XP_004507812.1 22 PKLCDSCKLSSAALFCRSHSAFLCINCDSRIHCAnklssrHE 63
                    578*****999********************95545666666 PP
2zf-B_box28.62.9e-0965110342
        zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                      ++C+ +e+ +++  C+ +   lC +C + +H+       H++vp+
  XP_004507812.1  65 VWMCEVCEQAPASVTCKADAAALCVTCDSDIHSAnplarrHERVPV 110
                     689*****************************66899999*99986 PP
3CCT69.67.8e-24305348144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  XP_004507812.1 305 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 348
                     9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.1E-102067IPR000315B-box-type zinc finger
PROSITE profilePS5011910.0962067IPR000315B-box-type zinc finger
CDDcd000212.58E-62467No hitNo description
PROSITE profilePS5011911.00763110IPR000315B-box-type zinc finger
PfamPF006433.1E-765110IPR000315B-box-type zinc finger
CDDcd000214.44E-966110No hitNo description
SMARTSM003361.7E-1068110IPR000315B-box-type zinc finger
PROSITE profilePS5101716.787305347IPR010402CCT domain
PfamPF062036.0E-18305347IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MGIERGGGGG LKGFRSGWSV PPKLCDSCKL SSAALFCRSH SAFLCINCDS RIHCANKLSS  60
RHERVWMCEV CEQAPASVTC KADAAALCVT CDSDIHSANP LARRHERVPV EPFFDSAESV  120
VNSSTAATAG AFNFAVPTDD CFSQDDAEAA AWLIPNPNFT SKLTEAPDIK TRDMFFSDMD  180
PFIDFDYSNT FQNNNNCSSA INDSVVPVQT KPTPAPMMNH NSESCFDIDF CRSKLSSFNY  240
PAQSISQSQV SSSSLDVGVV PDGNAVPEMS YSFGRNSSES SGMVSGGVNS QQGVQVATQL  300
CGMDREARVL RYREKRKNRK FEKTIRYASR KAYAETRPRI KGRFAKRTEI DSEVDRLYDP  360
IEIDHLTVPS SLLIDSPYGV VPTF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004507812.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004507812.10.0zinc finger protein CONSTANS-LIKE 5 isoform X1
SwissprotQ9FHH81e-114COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLA0A1S2YPC00.0A0A1S2YPC0_CICAR; zinc finger protein CONSTANS-LIKE 5 isoform X1
STRINGXP_004507812.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-111CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]