PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004507551.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family FAR1
Protein Properties Length: 229aa    MW: 26305 Da    PI: 8.5868
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004507551.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR183.24.2e-2665153290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     fY+eYA++vGF +r+ + ++s+r+g+i  r++ C+keg+  + + k    r++r++tr gCka++++k +k+gkw++tk++++HnH+l+
  XP_004507551.1  65 FYDEYARHVGFVMRVMSCRRSERDGRILARRLGCNKEGHCVSIRGKFGPVRKPRSSTRDGCKAMIHIKYDKSGKWVITKFVKDHNHPLV 153
                     9**************************************99999998****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-2365153IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MLSRLVDGNG EMEVSGDAGL VEPNDGCRLL ESYSGRELGT SHHDHAIQEP YEGMEFVSED  60
AAKIFYDEYA RHVGFVMRVM SCRRSERDGR ILARRLGCNK EGHCVSIRGK FGPVRKPRSS  120
TRDGCKAMIH IKYDKSGKWV ITKFVKDHNH PLVVSPREAR QTVDEKDKKI QELTTELRIK  180
KRLCATYQEQ LTSFMKTVED HSDKLSARIR HILGNLKEFE SIEELLLQR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004507551.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1444250.0BT144425.1 Medicago truncatula clone JCVI-FLMt-6J23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004507551.11e-170protein FAR1-RELATED SEQUENCE 5-like isoform X3
RefseqXP_004507552.11e-170protein FAR1-RELATED SEQUENCE 5-like isoform X3
RefseqXP_012573277.11e-170protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBLA0A1S2YNR31e-169A0A1S2YNR3_CICAR; protein FAR1-RELATED SEQUENCE 5-like isoform X3
TrEMBLA0A1S3EBR21e-169A0A1S3EBR2_CICAR; protein FAR1-RELATED SEQUENCE 5-like isoform X2
STRINGXP_004507548.11e-169(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.11e-103FAR1 family protein