PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_004507522.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 710aa MW: 79994.9 Da PI: 4.6903 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.5 | 5.3e-17 | 77 | 124 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lv++v+++G g+W+++ + +g+ R++k+c++rw+++l XP_004507522.1 77 KGPWTLAEDAILVEYVQKYGEGNWSAVQKIFGLARCGKSCRLRWNNHL 124 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.8 | 3.2e-15 | 131 | 173 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T+eE+ +v+++ lG++ W+ Ia++++ gRt++++k++w++ XP_004507522.1 131 CAFTAEEENSIVELHSILGNK-WAQIAQKLP-GRTDNEIKNYWHT 173 589******************.*********.***********86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.994 | 72 | 128 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.98E-30 | 75 | 171 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-14 | 76 | 126 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.4E-16 | 77 | 124 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-22 | 78 | 132 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.18E-12 | 79 | 124 | No hit | No description |
PROSITE profile | PS51294 | 19.278 | 129 | 179 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-13 | 129 | 177 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-13 | 131 | 173 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.40E-10 | 132 | 173 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.0E-21 | 133 | 177 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 710 aa Download sequence Send to blast |
MSSIPNTDDG QKIVKRIRYD RETVKHSQSL VSQEEADNGD NTEEGGNIEE GRGDGSLKKG 60 PDNRDTKEGG RDGNLTKGPW TLAEDAILVE YVQKYGEGNW SAVQKIFGLA RCGKSCRLRW 120 NNHLRPDLRK CAFTAEEENS IVELHSILGN KWAQIAQKLP GRTDNEIKNY WHTRSKRLKK 180 VGLPIYPEEV EQRAKKINQE HVDLIANQHC DDDSQTTNLN ILDEIFESYI RHPGPILLPP 240 SVDIHGSDLV DRSIDFNSNN VVVPQIDQRK NYSMVSPPCD PCTSNQLHDN YIMLFPPCDS 300 CTNNQFHGLS CDLCTNNQFH DNYFMLSPPC DPCTSNQFHG PPCDPCISNQ CHGPPSDACT 360 SNQFHDNYFM LSPPCDSCTN NKFHGPPCDP CTINQFHEYD NYSMLSPLCD SCTNNQFHGP 420 PCDPCTNNQF HGPPCDPCTN NQFHEYNNLT IDSHATLNDN ISSSEPIYDE STTYELPSFQ 480 CLHTQKCNLN TPVSRIPPHE SIDTVIQIPP IEEPKKSIIV YSDNDGLLNA RAFQNGSNVQ 540 DGIEQTAHDA TFKGSNVQEG IEQTAHDEAL KISTYNSICA EWDKLDELKY NPFNESFATF 600 QCSDHNNHHT SIWPIDEIQS LETTQNHRSN NSHITNDSSI LNQIDLGHLD ALPDFNQPNN 660 IDYSSDHNGI NQNAFMARTN NFSMIGYLNQ TDLTCSDVLP DSNIIPRKNE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-31 | 74 | 177 | 4 | 106 | B-MYB |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_004507522.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
STRING | XP_004507522.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2047 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G26960.1 | 7e-55 | myb domain protein 81 |