PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004507520.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

DBB

Protein Properties

Length: 181aa MW: 20301.9 Da PI: 6.8976

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004507520.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21	7.2e-07	4	43	5	38
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38 C+ + ++e+ +fC ++ lC+ C ++H + H+ XP_004507520.1 4 QCDVCRKQEALFFCPADEAALCNHCDHTIH-YanklaakHK 43 7*****************************.4467777776 PP
2	zf-B_box	31.7	3.1e-10	56	95	4	37
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + C+ ++e ++ lfC+d++ lC++C +H+ H XP_004507520.1 56 PLCDICNERRAYLFCKDDRAILCRECDIPIHRVnelakkH 95 78*****************************535555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.495	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	1.34E-4	3	47	No hit	No description
SMART	SM00336	1.1E-6	4	47	IPR000315	B-box-type zinc finger
Pfam	PF00643	3.9E-5	4	44	IPR000315	B-box-type zinc finger
SMART	SM00336	3.7E-14	53	100	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.296	53	100	IPR000315	B-box-type zinc finger
CDD	cd00021	3.39E-9	56	100	No hit	No description
Pfam	PF00643	1.7E-8	56	96	IPR000315	B-box-type zinc finger

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0080167	Biological Process	response to karrikin
GO:1900458	Biological Process	negative regulation of brassinosteroid mediated signaling pathway
GO:2000306	Biological Process	positive regulation of photomorphogenesis
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MKIQCDVCRK QEALFFCPAD EAALCNHCDH TIHYANKLAA KHKRFSLHHP TSKDTPLCDI 60 CNERRAYLFC KDDRAILCRE CDIPIHRVNE LAKKHNRFLL TGVKLGASSS DATTSNGSEV 120 RNTRSGPSSF SSENVSSTCT FKDNMAWDTV STSSISEYLI ETISGYCMED LFDASYAPNV 180 F

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269\|PubMed:22535582}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004507520.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027191166.1	1e-134	B-box zinc finger protein 20-like
Swissprot	Q0IGM7	4e-55	BBX20_ARATH; B-box zinc finger protein 20
TrEMBL	A0A3Q7Y1B1	1e-132	A0A3Q7Y1B1_CICAR; B-box zinc finger protein 20-like
STRING	XP_004507520.1	1e-133	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1448	34	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39070.1	2e-57	DBB family protein

Publications ? help Back to Top
Wei CQ, et al. The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis. J Genet Genomics, 2016. 43(9): p. 555-563 [PMID:27523280] Thussagunpanit J, et al. Involvement of STH7 in light-adapted development in Arabidopsis thaliana promoted by both strigolactone and karrikin. Biosci. Biotechnol. Biochem., 2017. 81(2): p. 292-301 [PMID:27858514]