PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004507504.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | GATA | ||||||||
Protein Properties | Length: 289aa MW: 32318.1 Da PI: 6.0558 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.7 | 7.5e-19 | 209 | 242 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs+C++ kTp+WR gp g+ktLCnaCG+++++ + XP_004507504.1 209 CSHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGR 242 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 1.8E-75 | 24 | 289 | IPR016679 | Transcription factor, GATA, plant |
SMART | SM00401 | 4.7E-15 | 203 | 253 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.187 | 203 | 239 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.43E-14 | 206 | 266 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.6E-14 | 207 | 240 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.11E-15 | 208 | 265 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 209 | 234 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.5E-16 | 209 | 242 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MEVVVAKALK PSLRTESIFP QTICEEILCL NANNVVVGED FSVDDLLDFS HGEFQHSSVG 60 KEIDDYEEEE DQEKDSVTSG SSHDRTEDDG ISNSTAFSGS AESDSIFAAG LEVPTDDVAD 120 LEWVSHFVDD SLPELSLLYP VRARPEPEPR PSPTETPVHL SLIRKKPRTN KTRKPNCHIW 180 SFNPVLSATK KQRKKAEVQP GGPQFQRRCS HCQVQKTPQW RTGPLGPKTL CNACGVRFKS 240 GRLFPEYRPA SSPTFSGDIH SNSHRKVLEM RRRKETDETA SGLNRVQMV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004507504.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004507504.1 | 0.0 | GATA transcription factor 7-like | ||||
TrEMBL | A0A1S2YNH9 | 0.0 | A0A1S2YNH9_CICAR; GATA transcription factor | ||||
STRING | XP_004507504.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1108 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34680.2 | 1e-47 | GATA transcription factor 3 |