PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004507369.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family B3
Protein Properties Length: 431aa    MW: 48587.1 Da    PI: 9.2304
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004507369.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.55.2e-18796298
                    EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                     k  + +++l+ ++l+lp +f++++gg+   s  +tl+ ++g +W+v l  +k+++++++++GW+eFv+   + +g  ++F+++g+s+f  +v +f+
  XP_004507369.1  7 HKLVL-PSTLQAKQLRLPDNFMRKYGGQ--ISPIVTLTVPDGSVWRVGL--KKSDNKFWFRDGWNEFVHRYSISTGYLLLFRYEGKSSF--NVNIFS 96
                    44444.45555567***********888..6679***************..*********************************99999..888875 PP
2B358.51.2e-18300390498
                     E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     vl ps+  + ++++lp  fae+h +g++     ++l+ ++gr+W v++ yr+++    l++GW eF  +n+L egD++vF+l g+++  l v+vf
  XP_004507369.1 300 VLRPSYLYRGCIMYLPSCFAEKHlNGVSG---FIKLQISDGRQWPVRCLYRGGR--AKLSQGWFEFSLENNLGEGDVCVFELLGTKDVVLQVTVF 389
                     78899******************877743...59999***********665555..66***************************9999999999 PP

                     - CS
              B3  98 r 98 
                     r
  XP_004507369.1 390 R 390
                     8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-23396IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-22396IPR015300DNA-binding pseudobarrel domain
CDDcd100172.19E-19496No hitNo description
PROSITE profilePS5086313.422598IPR003340B3 DNA binding domain
SMARTSM010195.4E-19698IPR003340B3 DNA binding domain
PfamPF023621.5E-15996IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.2E-25289391IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-25290391IPR015300DNA-binding pseudobarrel domain
CDDcd100171.00E-22295390No hitNo description
SMARTSM010198.8E-17297392IPR003340B3 DNA binding domain
PROSITE profilePS5086313.831297392IPR003340B3 DNA binding domain
PfamPF023621.7E-16300390IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MPCPSFHKLV LPSTLQAKQL RLPDNFMRKY GGQISPIVTL TVPDGSVWRV GLKKSDNKFW  60
FRDGWNEFVH RYSISTGYLL LFRYEGKSSF NVNIFSLATS EINYQSSTAQ SSKEGPYYAK  120
CLKIFEELED EDSIELLDSM PSKLTPGPLQ NKAFSGSADK FTPGKSHSPP ALQNLFNASK  180
LNSINWGDGG NTLSSRSANS VDNHLTRDIG LQFNVVEFKK STEEVKLRAA IDEKVKKSAT  240
KKRKSDVQEP SSDHEDEVEM RNRFYESASA RKRTVTAEER EKAINAAKEF EPTNPFCRVV  300
LRPSYLYRGC IMYLPSCFAE KHLNGVSGFI KLQISDGRQW PVRCLYRGGR AKLSQGWFEF  360
SLENNLGEGD VCVFELLGTK DVVLQVTVFR ITGDEGPLSP PPLQQNQHVR PAKLLTSPFQ  420
HHLTSTKLHG N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-7226339115142B3 domain-containing transcription factor VRN1
4i1k_B2e-7226339115142B3 domain-containing transcription factor VRN1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004507369.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004507369.10.0B3 domain-containing transcription factor VRN1-like isoform X2
SwissprotQ8L3W11e-131VRN1_ARATH; B3 domain-containing transcription factor VRN1
TrEMBLA0A1S2YN780.0A0A1S2YN78_CICAR; B3 domain-containing transcription factor VRN1-like isoform X2
STRINGXP_004507368.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-106B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Kumar A,Singh A,Panigrahy M,Sahoo PK,Panigrahi KCS
    Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana.
    Plant Cell Rep., 2018. 37(6): p. 901-912
    [PMID:29541883]