PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004507367.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | B3 | ||||||||
Protein Properties | Length: 146aa MW: 17149.9 Da PI: 10.4595 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.2 | 3e-13 | 19 | 102 | 11 | 99 |
HHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 11 lksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++r+ +p k + + g ++ + l + g++W+v + k +++ ++++GWk+F k+n + +f++F++ + ++f v++f k XP_004507367.1 19 QNTNRMKVPQKIV-MCldeG--LWRKAFIFLIGPCGEKWKVSI--LKEGNELYMQNGWKKFMKDNSVVHDEFLLFTYGE-KRF--QVQIFGK 102 4566788888887.555533..3355679999***********..*******************************844.777..9999976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.2E-17 | 5 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.44E-17 | 6 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.194 | 9 | 103 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.7E-8 | 12 | 103 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-10 | 18 | 102 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.09E-8 | 44 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MEHDQQDKPS SFFTIIKDQN TNRMKVPQKI VMCLDEGLWR KAFIFLIGPC GEKWKVSILK 60 EGNELYMQNG WKKFMKDNSV VHDEFLLFTY GEKRFQVQIF GKNGIERPCV KKEQVQEEQK 120 VAPIVAKKKR GRPRKIHIPA XRPGPK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004507367.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004507367.1 | 1e-104 | B3 domain-containing protein Os11g0197600-like | ||||
TrEMBL | A0A1S3EBK1 | 1e-102 | A0A1S3EBK1_CICAR; B3 domain-containing protein Os11g0197600-like | ||||
STRING | XP_004507367.1 | 1e-103 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14239 | 9 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06220.1 | 1e-10 | B3 family protein |