PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004507232.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 249aa    MW: 29192.4 Da    PI: 4.6799
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004507232.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding482.9e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W+ eEde+l  +++++G  +W+  ++   ++R++k+c++rw++yl
   XP_004507232.1 14 KGEWSREEDEKLSAYIQKHGHSNWRQLPKQADLKRCGKSCRLRWLNYL 61
                     799*******************************************97 PP
2Myb_DNA-binding54.33.2e-1768112248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g+ + eE+e ++++++++G++ W++Ia++++ gRt+ ++k++w++yl
   XP_004507232.1  68 GSYSSEEEEMIIKLHHRHGNK-WSLIAEKLP-GRTDHEIKNYWHSYL 112
                      67899****************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.968961IPR017930Myb domain
SuperFamilySSF466891.27E-2811108IPR009057Homeodomain-like
SMARTSM007171.7E-121363IPR001005SANT/Myb domain
PfamPF002492.0E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-221568IPR009057Homeodomain-like
CDDcd001674.71E-91661No hitNo description
PROSITE profilePS5129425.14862116IPR017930Myb domain
SMARTSM007176.4E-1666114IPR001005SANT/Myb domain
PfamPF002493.9E-1668112IPR001005SANT/Myb domain
CDDcd001673.67E-1169112No hitNo description
Gene3DG3DSA:1.10.10.605.1E-2569115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MVRAPFYDKN GLKKGEWSRE EDEKLSAYIQ KHGHSNWRQL PKQADLKRCG KSCRLRWLNY  60
LRPNLKHGSY SSEEEEMIIK LHHRHGNKWS LIAEKLPGRT DHEIKNYWHS YLKKSSKINE  120
IKFSDQLNQM SCDSNVEENI ETNNFETPET PSSNAGKDCL YILESSTILP MSTETSTGDN  180
YLPTLENCPR TEEDDVAPWL TFEEFSGDFW TEPCILEDTY ITNNEISNDE IDIDLFLQDF  240
FDCSYSYAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-241211525127MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004507232.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004507232.10.0transcription factor WER-like
TrEMBLA0A1S2YMW60.0A0A1S2YMW6_CICAR; transcription factor WER-like
STRINGXP_004507232.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.15e-53myb domain protein 63