PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004507092.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | MYB | ||||||||
Protein Properties | Length: 331aa MW: 37401.2 Da PI: 5.0915 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.5 | 1.8e-14 | 18 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++ G g+W+ +ar g+ R++k+c++rw +yl XP_004507092.1 18 KGLWSPEEDEKLMNYMLNSGQGCWSDVARNAGLQRCGKSCRLRWINYL 65 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.6 | 4.4e-16 | 71 | 114 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+el+++ + +lG++ W+ Ia++++ gRt++++k++w++ XP_004507092.1 71 RGAFSPQEEELIIHFHSLLGNR-WSQIAARLP-GRTDNEIKNFWNS 114 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.286 | 13 | 65 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-23 | 13 | 68 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.56E-27 | 16 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.9E-10 | 17 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.8E-13 | 18 | 65 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.84E-8 | 21 | 65 | No hit | No description |
PROSITE profile | PS51294 | 25.204 | 66 | 120 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-25 | 69 | 121 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-15 | 70 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.8E-15 | 71 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.14E-11 | 73 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MRKPEASTGK NNTNKLRKGL WSPEEDEKLM NYMLNSGQGC WSDVARNAGL QRCGKSCRLR 60 WINYLRPDLK RGAFSPQEEE LIIHFHSLLG NRWSQIAARL PGRTDNEIKN FWNSTIKKRL 120 KNISSNTSPN ASESSYDPNK DPNNMGGFIT SSTQDQNIDH FMPMFNTSSP SMQNTVLNTI 180 LEHGINMSSS IGGGFFNNAT TGTYFSQNHD NKSFYLEKVF GSVNINGGEV EEMEMYNVPP 240 LESVSVTSEN NIKVENINAL CNGKDTNNIS SYHFDDINNN INVNNSCNGS DENRAHHEVE 300 NLFHEDLNVG DWDLEELMKD VSSFPFLDFS N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-27 | 16 | 120 | 5 | 108 | B-MYB |
1h8a_C | 9e-27 | 16 | 120 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004507092.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT140096 | 4e-98 | BT140096.1 Lotus japonicus clone JCVI-FLLj-12H15 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004507092.1 | 0.0 | transcription factor MYB83 | ||||
TrEMBL | A0A1S2YML3 | 0.0 | A0A1S2YML3_CICAR; transcription factor MYB83 | ||||
STRING | XP_004507092.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF774 | 34 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08500.1 | 4e-77 | myb domain protein 83 |