PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004507092.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 331aa    MW: 37401.2 Da    PI: 5.0915
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004507092.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.51.8e-141865148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l ++    G g+W+ +ar  g+ R++k+c++rw +yl
   XP_004507092.1 18 KGLWSPEEDEKLMNYMLNSGQGCWSDVARNAGLQRCGKSCRLRWINYL 65
                     678*******************************************97 PP

2Myb_DNA-binding50.64.4e-1671114146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+el+++ + +lG++ W+ Ia++++ gRt++++k++w++
   XP_004507092.1  71 RGAFSPQEEELIIHFHSLLGNR-WSQIAARLP-GRTDNEIKNFWNS 114
                      89********************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.2861365IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-231368IPR009057Homeodomain-like
SuperFamilySSF466891.56E-2716112IPR009057Homeodomain-like
SMARTSM007179.9E-101767IPR001005SANT/Myb domain
PfamPF002496.8E-131865IPR001005SANT/Myb domain
CDDcd001672.84E-82165No hitNo description
PROSITE profilePS5129425.20466120IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-2569121IPR009057Homeodomain-like
SMARTSM007171.8E-1570118IPR001005SANT/Myb domain
PfamPF002496.8E-1571114IPR001005SANT/Myb domain
CDDcd001676.14E-1173113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MRKPEASTGK NNTNKLRKGL WSPEEDEKLM NYMLNSGQGC WSDVARNAGL QRCGKSCRLR  60
WINYLRPDLK RGAFSPQEEE LIIHFHSLLG NRWSQIAARL PGRTDNEIKN FWNSTIKKRL  120
KNISSNTSPN ASESSYDPNK DPNNMGGFIT SSTQDQNIDH FMPMFNTSSP SMQNTVLNTI  180
LEHGINMSSS IGGGFFNNAT TGTYFSQNHD NKSFYLEKVF GSVNINGGEV EEMEMYNVPP  240
LESVSVTSEN NIKVENINAL CNGKDTNNIS SYHFDDINNN INVNNSCNGS DENRAHHEVE  300
NLFHEDLNVG DWDLEELMKD VSSFPFLDFS N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-27161205108B-MYB
1h8a_C9e-271612025128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004507092.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1400964e-98BT140096.1 Lotus japonicus clone JCVI-FLLj-12H15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004507092.10.0transcription factor MYB83
TrEMBLA0A1S2YML30.0A0A1S2YML3_CICAR; transcription factor MYB83
STRINGXP_004507092.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77434128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.14e-77myb domain protein 83