PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004507033.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family AP2
Protein Properties Length: 328aa    MW: 37514.3 Da    PI: 7.7572
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004507033.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2513.5e-163897155
             AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55
                    s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa+a++ a++k++g
  XP_004507033.1 38 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqsKKgRQVYLGAYDDEEAAARAYDLAALKYWG 97
                    57*******************999977777557*************************98 PP
2AP251.42.7e-16140191155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  XP_004507033.1 140 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 191
                     89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.17E-1138107No hitNo description
SuperFamilySSF541711.05E-1738107IPR016177DNA-binding domain
PfamPF008473.8E-123897IPR001471AP2/ERF domain
PROSITE profilePS5103220.58739105IPR001471AP2/ERF domain
SMARTSM003804.3E-2839111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-1639106IPR001471AP2/ERF domain
PRINTSPR003673.5E-64051IPR001471AP2/ERF domain
CDDcd000181.08E-23140201No hitNo description
SuperFamilySSF541719.15E-18140201IPR016177DNA-binding domain
PfamPF008474.9E-12140191IPR001471AP2/ERF domain
PROSITE profilePS5103218.334141199IPR001471AP2/ERF domain
SMARTSM003801.8E-24141205IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.8E-18141200IPR001471AP2/ERF domain
PRINTSPR003673.5E-6181201IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MAKKSQKTLK NTSTSSSTMV KQRTRKSIPR NSPPQRSSIY RGVTRHRWTG RYEAHLWDKN  60
CWNESQSKKG RQVYLGAYDD EEAAARAYDL AALKYWGQDT ILNFPVSNYQ DELKEMENLS  120
KEEYIGSLRR KSSGFSRGVS KYRGVARHHH NGRWEARIGR VFGNKYLYLG TYATQEEAAT  180
AYDMAAIEYR GLNAVTNFDL SRYINWLRPK NKDNKNNINN NHTQNSSNDE ELDLNQELDG  240
SATSASSTFD LILKSSSKFK EMLENTSSEN SRTPSPPESS LPSRTFPEDI QTIFETQDSE  300
VYTENDDDII FGELSSIAAP IFHYGLDV
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004507033.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004507033.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-118AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A1S2YMF30.0A0A1S2YMF3_CICAR; AP2-like ethylene-responsive transcription factor At1g16060
STRINGXP_004507033.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-104ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]