PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004507018.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GATA
Protein Properties Length: 299aa    MW: 32940.5 Da    PI: 7.234
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004507018.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.21.5e-15222257134
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ kg
  XP_004507018.1 222 CRHCGISEkcTPMMRRGPEGPRTLCNACGLMWANKG 257
                     *********************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.2E-1078113IPR010399Tify domain
PROSITE profilePS5132014.1978113IPR010399Tify domain
PfamPF062008.4E-1284112IPR010399Tify domain
PfamPF062032.8E-16146188IPR010402CCT domain
PROSITE profilePS5101713.156146188IPR010402CCT domain
PROSITE profilePS501148.616216272IPR000679Zinc finger, GATA-type
SMARTSM004012.4E-11216269IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-13217281No hitNo description
Gene3DG3DSA:3.30.50.106.2E-15220263IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.45E-12221263No hitNo description
PROSITE patternPS003440222249IPR000679Zinc finger, GATA-type
PfamPF003202.3E-13222257IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDGIRGGDSR MQISDGQHPV HVPYEHHGLH HMSNGNGMDD DHNNGRDSNC GGSESVEGDI  60
PSNHGNLHDN HNLMMDQGND IGDQLTLSFQ GQVYVFDSVS PEKVQSVLLL LGGREMHPTL  120
PSVPISPDEN NRGFIGTPQK FSVPQRLASL NRFREKRKER NFDKKIRYTV RKEVALRMQR  180
NKGQFTSSKS NHDESASAAM NGGTNEGLIA DNNGSQQHDI VCRHCGISEK CTPMMRRGPE  240
GPRTLCNACG LMWANKGALR DLSRAATLPV AHNSPLNKNE NKNSETNQIV LRDAAESSS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004507018.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004507018.10.0GATA transcription factor 28 isoform X1
SwissprotQ8H1G01e-129GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A1S2YMG40.0A0A1S2YMG4_CICAR; GATA transcription factor 28 isoform X1
STRINGXP_004507018.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136512325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-123ZIM-LIKE 2