PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004506787.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 293aa    MW: 33934.7 Da    PI: 9.2492
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004506787.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.39.4e-103379347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     +WT eE +l+ +a +++ ++   +W ++a++++ ++t  ++  +++++
   XP_004506787.1 33 KWTLEENKLFENALALYDKDtpnRWMKVAKMIP-TKTIGDVMKHYRDL 79
                     8********************************.***********986 PP
2Myb_DNA-binding48.81.6e-15141185347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WTteE+ +++ + k++G+g+Wk I++ + ++Rt+ q+ s+ qky
   XP_004506787.1 141 PWTTEEHRKFLMGLKKYGKGDWKNISHDFVTTRTPTQVASHAQKY 185
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.482984IPR017884SANT domain
SMARTSM007173.4E-83082IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-43280IPR009057Homeodomain-like
SuperFamilySSF466895.94E-123388IPR009057Homeodomain-like
CDDcd001673.48E-73380No hitNo description
PfamPF002491.2E-83379IPR001005SANT/Myb domain
PROSITE profilePS5129418.185134190IPR017930Myb domain
SuperFamilySSF466894.35E-17136189IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-12136191IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-17137189IPR006447Myb domain, plants
SMARTSM007172.6E-12138188IPR001005SANT/Myb domain
CDDcd001674.11E-10141186No hitNo description
PfamPF002491.4E-12141185IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MRRVIDVLSP STCYHHLQNS NWLFQESKGI ITKWTLEENK LFENALALYD KDTPNRWMKV  60
AKMIPTKTIG DVMKHYRDLV EDVSVIESGL IPFPIYSTTS SFTLEWVKNQ NFDDCNNFFS  120
VNGKRGISNR LLEYDKKKGV PWTTEEHRKF LMGLKKYGKG DWKNISHDFV TTRTPTQVAS  180
HAQKYFLRQL NGGKDKKRSS IHDITMMNLI ETKSPSSQIY KTTSQLVKQE CNLKFSYENV  240
PSTVFNSTNG NMFMTPLMCD VSSYGSKPQD QCLLRDSLHG CQFGPYDTIM QRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-192799476RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004506787.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2032243e-61AC203224.21 Medicago truncatula clone mth2-152n14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004506787.10.0transcription factor DIVARICATA-like
SwissprotQ8S9H76e-88DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A1S2YLX70.0A0A1S2YLX7_CICAR; transcription factor DIVARICATA-like
STRINGXP_004506787.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-99MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]