PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004506679.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | GRAS | ||||||||
Protein Properties | Length: 547aa MW: 61986.6 Da PI: 4.815 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 440.3 | 1.3e-134 | 177 | 547 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l+e L++cA+av+ +d e +++++++l++++s +g+p++Rl ay++eAL +r+a+s+s++yk+l++se + e l+++++++e++P++kf++ XP_004506679.1 177 LKEMLYACAKAVAVNDIETIEWMVTELRKIVSISGSPIERLGAYVLEALVSRMASSGSTIYKSLKCSEPT---GNELLSYMHVLYEICPYFKFGY 268 5789*****************************************************************9...99******************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 + aN aI ea++ e++vHiiDf+isqG+QW++L+qaLa Rp+gpp++RiTgv+++ s + + +gerL+ +A++++vpfef++ v + ++ XP_004506679.1 269 MSANGAIAEAMKDENEVHIIDFQISQGTQWVSLIQALARRPGGPPRIRITGVDDSFSAyaRGGGVDVVGERLSTLAQSCHVPFEFHA-VRVSASE 362 ******************************************************7776889999***********************.68899** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 ++le+++++p+Ea+aVn++++lh+++desv+++++rd++L+lvk+lsPkvv++veqe ++n+++Fl+rf+e+++yysa+++s+++ lpr+++eri XP_004506679.1 363 VQLEDFELRPDEAVAVNFAIMLHHVPDESVNVHNHRDRLLRLVKHLSPKVVTLVEQEFNTNNAPFLQRFVETMNYYSAIYESIDVVLPRDHKERI 457 *********************************************************************************************** PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +vE+++l+re+vn++aceg+er+erhe l+kW++r+ +aGF+p+pls+++++++k ll+ + ++ y++ee++g+l+lgW+++ L++ +aWr XP_004506679.1 458 NVEQHCLAREVVNLIACEGEERVERHELLSKWSMRFAMAGFTPYPLSSFINSSIKDLLESYRGH-YTLEERDGALYLGWMNQVLIASCAWR 547 **************************************************************77.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 67.28 | 151 | 528 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.7E-132 | 177 | 547 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 547 aa Download sequence Send to blast |
MQTSQKHEIS YGSSRFYIEP VQNLESYGIP SSENIDNCSS SDNSSQTFYP SHQTLEPYST 60 LESASTSNSF PYQNSPSTIS FSSNNSPVSK LESKSYVLRP ERSLEFVHGS HEDDDSYLAH 120 DLDDLRHKIR ELESVMLGPN DDMLDIFDNE VQEESASFLL EAEKWKKNME MVSRGDLKEM 180 LYACAKAVAV NDIETIEWMV TELRKIVSIS GSPIERLGAY VLEALVSRMA SSGSTIYKSL 240 KCSEPTGNEL LSYMHVLYEI CPYFKFGYMS ANGAIAEAMK DENEVHIIDF QISQGTQWVS 300 LIQALARRPG GPPRIRITGV DDSFSAYARG GGVDVVGERL STLAQSCHVP FEFHAVRVSA 360 SEVQLEDFEL RPDEAVAVNF AIMLHHVPDE SVNVHNHRDR LLRLVKHLSP KVVTLVEQEF 420 NTNNAPFLQR FVETMNYYSA IYESIDVVLP RDHKERINVE QHCLAREVVN LIACEGEERV 480 ERHELLSKWS MRFAMAGFTP YPLSSFINSS IKDLLESYRG HYTLEERDGA LYLGWMNQVL 540 IASCAWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-64 | 181 | 547 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004506679.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT961058 | 0.0 | CT961058.16 M.truncatula DNA sequence from clone MTH2-80N17 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004506678.1 | 0.0 | scarecrow-like protein 21 | ||||
Refseq | XP_004506679.1 | 0.0 | scarecrow-like protein 21 | ||||
Swissprot | Q8H125 | 0.0 | SCL5_ARATH; Scarecrow-like protein 5 | ||||
TrEMBL | A0A1S2YLN9 | 0.0 | A0A1S2YLN9_CICAR; scarecrow-like protein 21 | ||||
STRING | XP_004506678.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50600.1 | 0.0 | scarecrow-like 5 |
Publications ? help Back to Top | |||
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