PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004506678.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GRAS
Protein Properties Length: 547aa    MW: 61986.6 Da    PI: 4.815
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004506678.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS440.31.3e-1341775471374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l+e L++cA+av+ +d e +++++++l++++s +g+p++Rl ay++eAL +r+a+s+s++yk+l++se +     e l+++++++e++P++kf++
  XP_004506678.1 177 LKEMLYACAKAVAVNDIETIEWMVTELRKIVSISGSPIERLGAYVLEALVSRMASSGSTIYKSLKCSEPT---GNELLSYMHVLYEICPYFKFGY 268
                     5789*****************************************************************9...99******************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN aI ea++ e++vHiiDf+isqG+QW++L+qaLa Rp+gpp++RiTgv+++ s   +   +  +gerL+ +A++++vpfef++ v  + ++
  XP_004506678.1 269 MSANGAIAEAMKDENEVHIIDFQISQGTQWVSLIQALARRPGGPPRIRITGVDDSFSAyaRGGGVDVVGERLSTLAQSCHVPFEFHA-VRVSASE 362
                     ******************************************************7776889999***********************.68899** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++le+++++p+Ea+aVn++++lh+++desv+++++rd++L+lvk+lsPkvv++veqe ++n+++Fl+rf+e+++yysa+++s+++ lpr+++eri
  XP_004506678.1 363 VQLEDFELRPDEAVAVNFAIMLHHVPDESVNVHNHRDRLLRLVKHLSPKVVTLVEQEFNTNNAPFLQRFVETMNYYSAIYESIDVVLPRDHKERI 457
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +vE+++l+re+vn++aceg+er+erhe l+kW++r+ +aGF+p+pls+++++++k ll+ + ++ y++ee++g+l+lgW+++ L++ +aWr
  XP_004506678.1 458 NVEQHCLAREVVNLIACEGEERVERHELLSKWSMRFAMAGFTPYPLSSFINSSIKDLLESYRGH-YTLEERDGALYLGWMNQVLIASCAWR 547
                     **************************************************************77.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.28151528IPR005202Transcription factor GRAS
PfamPF035144.7E-132177547IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MQTSQKHEIS YGSSRFYIEP VQNLESYGIP SSENIDNCSS SDNSSQTFYP SHQTLEPYST  60
LESASTSNSF PYQNSPSTIS FSSNNSPVSK LESKSYVLRP ERSLEFVHGS HEDDDSYLAH  120
DLDDLRHKIR ELESVMLGPN DDMLDIFDNE VQEESASFLL EAEKWKKNME MVSRGDLKEM  180
LYACAKAVAV NDIETIEWMV TELRKIVSIS GSPIERLGAY VLEALVSRMA SSGSTIYKSL  240
KCSEPTGNEL LSYMHVLYEI CPYFKFGYMS ANGAIAEAMK DENEVHIIDF QISQGTQWVS  300
LIQALARRPG GPPRIRITGV DDSFSAYARG GGVDVVGERL STLAQSCHVP FEFHAVRVSA  360
SEVQLEDFEL RPDEAVAVNF AIMLHHVPDE SVNVHNHRDR LLRLVKHLSP KVVTLVEQEF  420
NTNNAPFLQR FVETMNYYSA IYESIDVVLP RDHKERINVE QHCLAREVVN LIACEGEERV  480
ERHELLSKWS MRFAMAGFTP YPLSSFINSS IKDLLESYRG HYTLEERDGA LYLGWMNQVL  540
IASCAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-641815478375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004506678.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT9610580.0CT961058.16 M.truncatula DNA sequence from clone MTH2-80N17 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004506678.10.0scarecrow-like protein 21
RefseqXP_004506679.10.0scarecrow-like protein 21
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLA0A1S2YLN90.0A0A1S2YLN9_CICAR; scarecrow-like protein 21
STRINGXP_004506678.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]