PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004506593.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

Dof

Protein Properties

Length: 370aa MW: 39721.7 Da PI: 9.4127

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004506593.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.2	1.8e-38	75	134	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg r+nk+s+ XP_004506593.1 75 ETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGFRRNKRSK 134 7789*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-35	58	132	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.7E-32	77	132	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.245	78	132	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	80	116	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MVFTSIPTAY LDAANWQQQQ QNHQQHGNGG SVSQQLLQSP PPPQPPSQPN GGSAGSIRPG 60 SMSDRARMAN MPMPETALKC PRCESTNTKF CYFNNYSLSQ PRHFCKTCRR YWTRGGALRN 120 VPVGGGFRRN KRSKGSNAGN STKSPASSDR QTGSASSTNS INSNNNHPSN DILGLTPHMA 180 SLRFMAPLHH NINNLNDFGG GDIGLNYGFS YMGGGGGGGG DLGSALGGGN VVNSILSSSG 240 LEQWRMPLQM TQQQHQFPNF LAGLEGSSNG LYPFEGNTQN HHELITSGYL RPKVINSTSG 300 IMTQLASVKM EDSNINLSRQ FLGISNNNIN DNQGSEQFWN SAIVASNSSA TWSDHVSGFS 360 SSSNTTSNHM

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MVFTSIPTAY LDAANWQQQQ QNHQQHGNGG SVSQQLLQSP PPPQPPSQPN GGSAGSIRPG  60
SMSDRARMAN MPMPETALKC PRCESTNTKF CYFNNYSLSQ PRHFCKTCRR YWTRGGALRN  120
VPVGGGFRRN KRSKGSNAGN STKSPASSDR QTGSASSTNS INSNNNHPSN DILGLTPHMA  180
SLRFMAPLHH NINNLNDFGG GDIGLNYGFS YMGGGGGGGG DLGSALGGGN VVNSILSSSG  240
LEQWRMPLQM TQQQHQFPNF LAGLEGSSNG LYPFEGNTQN HHELITSGYL RPKVINSTSG  300
IMTQLASVKM EDSNINLSRQ FLGISNNNIN DNQGSEQFWN SAIVASNSSA TWSDHVSGFS  360
SSSNTTSNHM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004506593.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004506593.1	0.0	dof zinc finger protein DOF2.4-like
TrEMBL	A0A1S2YLH2	0.0	A0A1S2YLH2_CICAR; dof zinc finger protein DOF2.4-like
STRING	XP_004506593.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF656	34	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.2	2e-51	OBF-binding protein 3