PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004506485.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C2H2 | ||||||||
Protein Properties | Length: 332aa MW: 37118.2 Da PI: 6.1316 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.3 | 0.0011 | 4 | 25 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC+ C +sFs+ L H+r+H XP_004506485.1 4 KCKLCFRSFSNGRALGGHMRSH 25 7********************9 PP | |||||||
2 | zf-C2H2 | 12.6 | 0.00042 | 200 | 222 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC C+k+F++ L H +H XP_004506485.1 200 YKCDTCNKMFRSYQALGGHRASH 222 9***********99999998887 PP | |||||||
3 | zf-C2H2 | 12.2 | 0.00057 | 253 | 275 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C ++F++ L H rtH XP_004506485.1 253 HECPVCYRVFNSGQALGGHKRTH 275 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.95 | 3 | 25 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.201 | 3 | 30 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.2E-5 | 4 | 25 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 5 | 25 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 5.7E-12 | 199 | 224 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.84E-8 | 199 | 275 | No hit | No description |
PROSITE profile | PS50157 | 10.284 | 200 | 227 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.028 | 200 | 222 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 202 | 222 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.3E-12 | 253 | 275 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.18 | 253 | 275 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.39 | 253 | 275 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 255 | 275 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MEKKCKLCFR SFSNGRALGG HMRSHVMNLP IPPKPKGSPP PTIQLSFEAE SASSPSSSSS 60 YGLRDKPKRS FLFTDPNQFI ESSSEILQDR ESETESSKNP TRPRSKRVKK LDTVKPNESV 120 LSSASDITTE EDIALCLMLL SRDSNNNWKT KPQTQPKHQE YEEEKQKSDE NEDEEEESEA 180 EPEEIKPFKA KNTKKLRARY KCDTCNKMFR SYQALGGHRA SHKKIKLIND EIGVDSEEEK 240 ININNINGES KIHECPVCYR VFNSGQALGG HKRTHGIVGS TTIATVTTNS EVRSSVKFGN 300 SFIDLNLPAP TDDDDDDVSQ IEGSAVSDAE FV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004506485.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004506485.1 | 0.0 | zinc finger protein ZAT9-like | ||||
TrEMBL | A0A1S2YL88 | 0.0 | A0A1S2YL88_CICAR; zinc finger protein ZAT9-like | ||||
STRING | XP_004506485.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 8e-50 | C2H2-like zinc finger protein |