PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004506474.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

GRAS

Protein Properties

Length: 733aa MW: 81833.9 Da PI: 6.2022

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004506474.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	314.3	2.7e-96	375	732	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 ++L++ Ae +++g+ +aq +Larl+++ sp g+p++R+a+y++eAL+ l++ ++ + ++ s+ + + ++ a+k fse+sP+l+f+++t XP_004506474.1 375 DQLYKTAELIEAGNPVQAQGILARLNHQLSPIGKPFHRAAFYMKEALQLVLHS------NTHNLTAFSPISFIFKIGAYKSFSEISPVLQFANFT 463 689***********************************************9......55566666666699****************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192 +Nqa++ea+e+ +r+H+iDfdi+ G+QW +++q+L R++g+psl++T+v+sp+s ++ el+ t+e+L+++A+ l+++fefnvl ++e+l+ + XP_004506474.1 464 CNQALVEALERFDRIHVIDFDIGFGVQWSSFMQELVLRSNGTPSLKVTAVVSPSSCNEIELNFTRENLSQYAKDLNMSFEFNVL---NIESLNSS 555 *******************************************************************************9...45555544 PP GRAS 193 eL.....rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282 + ++++Ea+ Vn+ ++ + + +s+ + L+++k+l+Pkvvv ++++d+ + ++ + ++ l++ysalf+sl+a +++ XP_004506474.1 556 SCplpghFFDSNEAIGVNFPVSSFISY------PSCFPLALHFIKQLRPKVVVTLDKNCDRIDVPLQTNAVHVLQCYSALFESLDAV-NVNHDVL 643 44223323566******666655......677778******************************************665.568999 PP GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +k+Er++++++i +++ +++ h +l Wr+ + ++GF+p ++s+++++qa++l+++ +++g++ve + slvl+W++++L+s+S Wr XP_004506474.1 644 QKIERHYIQPAINKIILGHHNR---SHDKLPPWRSLFLQSGFSPFTFSNFTEAQAECLVQRAPVRGFQVERKPSSLVLCWQRKELISISTWR 732 ***************99998...9***************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	43.379	347	712	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.3E-94	375	732	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 733 aa Download sequence Send to blast
MKAMPFSFEE FQGKGLCDFS STSTTSDSFS SLLLNQQKWT IDKEDYFCYV GNIEPTSVLD 60 SRRSPSPPIS SSTMSSSLGS GNGNGSASAP MAVVVSENPL PLSSSSHEES LETSQEKCGS 120 GLMRMEDWGE GQDQSLLRLI MGDVEDPSVG LNKLLQNSGC NSQNVDFHHG GFGVLDQHQG 180 LNIVETSVQG NYHGGFPYIA ENMDSNIHNA KTGHESMFSA SSGGGNYDLM LSSTSSPSVF 240 CSQQQQHEFG VVDEKPQVIN PNFMLNHNQV QFSENPSFFV PLSYPQVQEQ QVFSHHQLKR 300 PLFDNVGNNY QVPRLPVLDS GQEVFARRQT QLPLFPHHLQ QQQQHSVVPS AKQQKMNSTT 360 GDDASHQQLQ QSIFDQLYKT AELIEAGNPV QAQGILARLN HQLSPIGKPF HRAAFYMKEA 420 LQLVLHSNTH NLTAFSPISF IFKIGAYKSF SEISPVLQFA NFTCNQALVE ALERFDRIHV 480 IDFDIGFGVQ WSSFMQELVL RSNGTPSLKV TAVVSPSSCN EIELNFTREN LSQYAKDLNM 540 SFEFNVLNIE SLNSSSCPLP GHFFDSNEAI GVNFPVSSFI SYPSCFPLAL HFIKQLRPKV 600 VVTLDKNCDR IDVPLQTNAV HVLQCYSALF ESLDAVNVNH DVLQKIERHY IQPAINKIIL 660 GHHNRSHDKL PPWRSLFLQS GFSPFTFSNF TEAQAECLVQ RAPVRGFQVE RKPSSLVLCW 720 QRKELISIST WRC

Sequence ? help Back to Top

Protein Sequence Length: 733 aa Download sequence Send to blast

MKAMPFSFEE FQGKGLCDFS STSTTSDSFS SLLLNQQKWT IDKEDYFCYV GNIEPTSVLD  60
SRRSPSPPIS SSTMSSSLGS GNGNGSASAP MAVVVSENPL PLSSSSHEES LETSQEKCGS  120
GLMRMEDWGE GQDQSLLRLI MGDVEDPSVG LNKLLQNSGC NSQNVDFHHG GFGVLDQHQG  180
LNIVETSVQG NYHGGFPYIA ENMDSNIHNA KTGHESMFSA SSGGGNYDLM LSSTSSPSVF  240
CSQQQQHEFG VVDEKPQVIN PNFMLNHNQV QFSENPSFFV PLSYPQVQEQ QVFSHHQLKR  300
PLFDNVGNNY QVPRLPVLDS GQEVFARRQT QLPLFPHHLQ QQQQHSVVPS AKQQKMNSTT  360
GDDASHQQLQ QSIFDQLYKT AELIEAGNPV QAQGILARLN HQLSPIGKPF HRAAFYMKEA  420
LQLVLHSNTH NLTAFSPISF IFKIGAYKSF SEISPVLQFA NFTCNQALVE ALERFDRIHV  480
IDFDIGFGVQ WSSFMQELVL RSNGTPSLKV TAVVSPSSCN EIELNFTREN LSQYAKDLNM  540
SFEFNVLNIE SLNSSSCPLP GHFFDSNEAI GVNFPVSSFI SYPSCFPLAL HFIKQLRPKV  600
VVTLDKNCDR IDVPLQTNAV HVLQCYSALF ESLDAVNVNH DVLQKIERHY IQPAINKIIL  660
GHHNRSHDKL PPWRSLFLQS GFSPFTFSNF TEAQAECLVQ RAPVRGFQVE RKPSSLVLCW  720
QRKELISIST WRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	3e-31	381	731	26	377	Protein SCARECROW
5b3h_D	3e-31	381	731	26	377	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004506474.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC121238	0.0	AC121238.17 Medicago truncatula clone mth2-34p9, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004506474.1	0.0	scarecrow-like protein 6
TrEMBL	A0A1S2YL79	0.0	A0A1S2YL79_CICAR; scarecrow-like protein 6
STRING	XP_004506474.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3183	31	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-125	GRAS family protein