PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004506466.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 302aa    MW: 35043.6 Da    PI: 5.6034
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004506466.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.95.6e-141257146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+W+ eEde l++ vk++G+++W++I ++  + Rt+k+c++rw +
   XP_004506466.1 12 KGPWSSEEDEVLLEHVKKYGSRDWSSIRSKGLLPRTGKSCRLRWVN 57
                     79*************************8876677**********87 PP
2Myb_DNA-binding42.41.6e-1368108345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++++eE+   +++ kq+G++ W++Ia+++  gRt++++k++w 
   XP_004506466.1  68 KFSAEEESVVIELQKQFGNK-WAKIAACLE-GRTDNDVKNFWS 108
                      79******************.*********.***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.58163IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-20760IPR009057Homeodomain-like
SuperFamilySSF466894.12E-2810107IPR009057Homeodomain-like
SMARTSM007171.3E-121161IPR001005SANT/Myb domain
CDDcd001671.72E-111459No hitNo description
PfamPF139211.8E-121565No hitNo description
Gene3DG3DSA:1.10.10.602.8E-1761113IPR009057Homeodomain-like
PROSITE profilePS5129415.82764115IPR017930Myb domain
SMARTSM007177.6E-1165113IPR001005SANT/Myb domain
CDDcd001677.06E-968107No hitNo description
PfamPF002495.1E-1168108IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEREFEKGYI KKGPWSSEED EVLLEHVKKY GSRDWSSIRS KGLLPRTGKS CRLRWVNKLR  60
PNLKTGCKFS AEEESVVIEL QKQFGNKWAK IAACLEGRTD NDVKNFWSSR RKRLERTLAR  120
TPSPPFKQQK NKGKDMLILN NNQVKVEKVP ERGSNKLEEN LTYPISYMGN KEVFNMINLS  180
DLTKSNYQNI ENDLNTVEVE VTPLHTVPSF ESSSGYNFPL LPESQMDFSL FPECQNLVQE  240
PFDSNFMDMF EQEKCSDCVW SQKLETKLPT LGLEGNSQST NSNCFFKDFP TEIFEYFEDI  300
ST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-271011325126MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004506466.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004506466.10.0transcription factor DUO1-like
TrEMBLA0A1S2YLG00.0A0A1S2YLG0_CICAR; transcription factor DUO1-like
STRINGXP_004506466.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36933164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.17e-62MYB family protein