PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004506260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | MYB_related | ||||||||
Protein Properties | Length: 131aa MW: 15448.3 Da PI: 6.8031 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33 | 1.4e-10 | 66 | 108 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT E+ l++++ +++ +g k Ia++ g +Rt q+ s+ qky XP_004506260.1 66 WTSNEHWLFLQGLRLYNKGELKNIAKHAG-TRTSTQVASHAQKY 108 *****************************.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.019 | 58 | 113 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-4 | 62 | 111 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.02E-13 | 64 | 111 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.1E-5 | 65 | 112 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.5E-12 | 66 | 112 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.8E-8 | 66 | 108 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.72E-6 | 66 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MEDIIDHYSI PMMPIFSAMP NQSLESFQQS HFHYPNSINI DPIDVELSTY SDYNDLANRN 60 EAFPYWTSNE HWLFLQGLRL YNKGELKNIA KHAGTRTSTQ VASHAQKYFN RKTLTPEKRK 120 RKSIYDMTLE E |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004506260.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004506260.1 | 1e-95 | transcription factor MYBS2-like | ||||
TrEMBL | A0A1S2YL32 | 3e-94 | A0A1S2YL32_CICAR; transcription factor MYBS2-like | ||||
STRING | XP_004506260.1 | 5e-95 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF19356 | 3 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 1e-17 | MYB family protein |