PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004506167.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

C2H2

Protein Properties

Length: 318aa MW: 36396.1 Da PI: 8.3321

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004506167.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.3e-05	154	173	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ XP_004506167.1 154 FACSICNKTFNRYNNMQMHM 173 78*****************9 PP
2	zf-C2H2	16.6	2.2e-05	238	260	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cgk+F k + ++H +++ XP_004506167.1 238 FMCTKCGKTFAVKGDWRTHEKNC 260 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.07E-5	138	177	No hit	No description
Pfam	PF13912	1.6E-4	154	173	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.5E-6	154	173	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.081	154	176	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.512	154	181	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	156	176	IPR007087	Zinc finger, C2H2
SMART	SM00355	190	201	233	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	1.99E-6	224	258	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.6E-6	234	258	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	28	238	258	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.808	238	258	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MTMMECDVED NNFIEWLKPS SSLSYETSSS SSSSSSSSSS SSSSSCITKN DLVHETIQFF 60 PILSAKPSKE EEHDQLPQMK DFEVKEEKVE TQVNVALNIG LPNIKENIDE KKVLHAKEEE 120 KATKQTFHGF SLNNREKRFW IPTSSQILVG PMQFACSICN KTFNRYNNMQ MHMWGHGSEF 180 RKGRNSLRGT QPGAMLRLPC YCCAQGCKNN INHPRAKPLK DFRTLQTHYK RKHGTKPFMC 240 TKCGKTFAVK GDWRTHEKNC GKLWYCTCGS DFKHKRSLKD HVRSFGQGHN RLPNSLDQAF 300 EDDKECVTSS EEEEIVHT

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004506167.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC144515	1e-149	AC144515.14 Medicago truncatula clone mth2-5j8, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004506167.1	0.0	zinc finger protein WIP3
Swissprot	Q9SGD1	1e-112	ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBL	A0A1S2YKI1	0.0	A0A1S2YKI1_CICAR; zinc finger protein WIP3
STRING	XP_004506167.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08290.1	1e-110	WIP domain protein 3

Publications ? help Back to Top
Zhou X,Meier I Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins. Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5 [PMID:25074908]