PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004506079.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C2H2 | ||||||||
Protein Properties | Length: 268aa MW: 29398.7 Da PI: 6.349 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00022 | 183 | 205 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H XP_004506079.1 183 HECSICGSEFTSGQALGGHMRRH 205 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.52E-6 | 180 | 207 | No hit | No description |
PROSITE profile | PS50157 | 10.014 | 183 | 210 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.4E-11 | 183 | 206 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 185 | 205 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MEEFSNEEKF VDATSIAKGK RTKRLRFLSS CGVASTLMTS SCSSDDENEY FDDLEEEDDE 60 DMANCLILLA QGGSYQKQHS GGGDDGNDNN IAEKGSNGKK KIALGGHRAS HKKLKIMAEE 120 KRASLQLPEP RSYLSHDSQP IKLVAKSDEF EEGKEPRGGP TISSLQMGNH GLKAFYGNKH 180 KIHECSICGS EFTSGQALGG HMRRHRTSSA NASIIVDNDG GVRPRNILQL DLNLPAPEDD 240 LRETKFQFQT KNTSMVMSAS PTLVGCHY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004506079.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004506079.1 | 0.0 | zinc finger protein ZAT5 | ||||
TrEMBL | A0A1S2YKB1 | 0.0 | A0A1S2YKB1_CICAR; zinc finger protein ZAT5 | ||||
STRING | XP_004506079.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 2e-35 | C2H2 family protein |