PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004506013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | GATA | ||||||||
Protein Properties | Length: 317aa MW: 35842.6 Da PI: 9.423 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59.1 | 6e-19 | 230 | 263 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C +t+Tp+WR+gp g+ktLCnaCG++yr+ + XP_004506013.1 230 CMHCEVTETPQWREGPKGPKTLCNACGVRYRSGR 263 99*****************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 9.5E-17 | 224 | 274 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.925 | 224 | 260 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.76E-14 | 227 | 287 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 6.8E-15 | 228 | 261 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 6.27E-15 | 229 | 276 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 230 | 255 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 7.0E-17 | 230 | 263 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MKTNWFFDQN FNGVSEDILE DVIEFFDFRL DDVELTDVVE EDWNAQFKHL EEPSLGVFSV 60 PSSGLCGEIE TQNEKPKLGK SFSAAELSHI DGRNIVNSSL KDRQVLLAKT AGPAYGKTIP 120 IQNVSFNGKD LRRCQTYSPV SVFESSSYSS VDNFNFELPV IPAKRPRSKC RRRLSTFDKL 180 FSIPFISTPP AFRKRQRLAA SESVCRVQRK QRKTDSIRMK SQESVAPRKC MHCEVTETPQ 240 WREGPKGPKT LCNACGVRYR SGRLFPEYRP AASPTFEASS HSNSHKKVLE MRNKASQETF 300 KGSSMLYLSS NLPGSSV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004506013.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027191282.1 | 0.0 | GATA transcription factor 11-like | ||||
TrEMBL | A0A3Q7YCB1 | 0.0 | A0A3Q7YCB1_CICAR; GATA transcription factor 11-like | ||||
STRING | XP_004506013.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5758 | 28 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54810.2 | 1e-37 | GATA family protein |