PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004506012.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ARF
Protein Properties Length: 706aa    MW: 78577.2 Da    PI: 7.404
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004506012.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.52.9e-24108209199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g +++p+ +ae++        +++ +  t++ +d +g+ W++++iyr++++r++lt+GW++Fv++++L +gD+vvF   + +
  XP_004506012.1 108 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TVVAKDVHGEFWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFL--RAE 198
                     89****************************986445444..8************************************************..449 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++el+v+++r+
  XP_004506012.1 199 NGELCVGIRRA 209
                     999******97 PP
2Auxin_resp118.26.8e-39279362183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     a++ as++++FevvY+Prast+eF+vk++ v++a++++++ GmRfkm fetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
  XP_004506012.1 279 AMKLASNNQPFEVVYYPRASTPEFCVKASAVRAAMRIQWCSGMRFKMPFETEDSSRISWfMGTIASVQVVDPIRWPNSPWRLLQ 362
                     67899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-37101211IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.94E-30102209IPR015300DNA-binding pseudobarrel domain
CDDcd100173.16E-21107208No hitNo description
PROSITE profilePS5086313.211108210IPR003340B3 DNA binding domain
PfamPF023621.9E-22108209IPR003340B3 DNA binding domain
SMARTSM010191.1E-23108210IPR003340B3 DNA binding domain
PfamPF065071.6E-33279362IPR010525Auxin response factor
PROSITE profilePS5174516.151594674IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MKESEKGYLD PQLWHACAGG MVQIPQVNSK VFYFPQGHAE HANTNIDLRV SISSLILCKV  60
VAVKFMADPE TDEVFAIIKL LPLRNSELVY DEESGVGGLE NSEKPASFAK TLTQSDANNG  120
GGFSVPRYCA ETIFPRLDYS AEPPVQTVVA KDVHGEFWKF RHIYRGTPRR HLLTTGWSSF  180
VNQKKLVAGD SVVFLRAENG ELCVGIRRAK KGIGSGFEGS SCGGWTSGCS NNGNCGIGPF  240
GAFSFFLREE NKTLRNGFVG VDNDLSGRVR VRPEDVMEAM KLASNNQPFE VVYYPRASTP  300
EFCVKASAVR AAMRIQWCSG MRFKMPFETE DSSRISWFMG TIASVQVVDP IRWPNSPWRL  360
LQVTWDEPDL LQNVKRVSPW LVELVSNIPV IHFTPFTPPR KKLRIPQHPD FPLDVQFPSP  420
TFSGNQLGLN IPLSGLSDNA PASIQGARHA QFGGGISLSD FNLNNKLQLG SFHTNMHHLD  480
MHNRISNDNN MINNDNNKES LSCLLTIGKK PDKSLEKSQS DDVVVVKKHQ FCLFGQPILT  540
EQQISRNCSK DLLSHNEKNS VDENKHKEKC FFDVFSPGKT SAAAEFSWQL GLDIGHCKVF  600
LESEDVGRTL DLSLLGSYEE LYKKLANMFD LEKSEMLNHV FYRDATGAVK QTGEEPFSDF  660
MKTAKRLTIL TDSGSKNVRG AWITGTLKSE HGLDASNKTG PLSIFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-82438346388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004506012.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004506012.10.0auxin response factor 10
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1S2YK580.0A0A1S2YK58_CICAR; Auxin response factor
STRINGXP_004506012.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]