PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004505969.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 488aa    MW: 55334.8 Da    PI: 8.1915
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004505969.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.4e-056789123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+k F r  nL+ H r H
  XP_004505969.1 67 FVCEICNKGFQRDQNLQLHRRGH 89
                    89*******************88 PP

2zf-C2H211.90.00068144166123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  +s+ k H + +
  XP_004505969.1 144 WKCEKCSKKYAVQSDWKAHSKIC 166
                     58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.35E-76689No hitNo description
Gene3DG3DSA:3.30.160.601.6E-56689IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9496789IPR007087Zinc finger, C2H2
PfamPF121717.7E-56789IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0176789IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SMARTSM0035594109139IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.1E-5132165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.35E-7139164No hitNo description
SMARTSM00355140144164IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MMSKQPFSPH SNTTMMKPSS SNNHLQQTNP NPNPNPPKKK RNLPGTPDPD SEVIAMSPKS  60
LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTN KEQIKKKVYV CPEKSCVHND  120
PCRALGDLTG IKKHYSRKHG EKKWKCEKCS KKYAVQSDWK AHSKICGTRE YKCDCGTIFS  180
RKDSFITHRA FCDALTDESA KITTVPAALS NFRNDHLTNP HHQAPRFPQI FPGFQFHSEF  240
VGSGTSSEPL GNYTNISDYS QKLRLQPLWS NSSCNTMNDL VQTMDVFGSQ TQFMSYTNSN  300
NNNNNNNNIC LPMLHHGVIL KQEEEEEENK DLSHSVISSM YLSSQNPVDN NLVFNNNNVN  360
HFGNIVEGQK FYKQSNHHEE LNELVNLEGG EYLLNDSNNS FGIVNCTKSL EFVVTEPVEK  420
ETSTTKRQMH DSSSRTKNQM GLTRDFLGVG EDSMSGPFLH QELSEFNGMG SSISNLQNQY  480
GGGHGHYC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-36140205368Zinc finger protein JACKDAW
5b3h_F4e-36140205368Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004505969.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1393441e-150AC139344.17 Medicago truncatula clone mth2-34b22, complete sequence.
GenBankAC1699791e-150AC169979.24 Medicago truncatula clone mth2-174m19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004505969.10.0zinc finger protein BALDIBIS
TrEMBLA0A1S2YK240.0A0A1S2YK24_CICAR; zinc finger protein BALDIBIS
STRINGXP_004505969.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.14e-97C2H2-like zinc finger protein