PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004505969.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C2H2 | ||||||||
Protein Properties | Length: 488aa MW: 55334.8 Da PI: 8.1915 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.3 | 1.4e-05 | 67 | 89 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_004505969.1 67 FVCEICNKGFQRDQNLQLHRRGH 89 89*******************88 PP | |||||||
2 | zf-C2H2 | 11.9 | 0.00068 | 144 | 166 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + XP_004505969.1 144 WKCEKCSKKYAVQSDWKAHSKIC 166 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.35E-7 | 66 | 89 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.6E-5 | 66 | 89 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.949 | 67 | 89 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 7.7E-5 | 67 | 89 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.017 | 67 | 89 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 69 | 89 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 94 | 109 | 139 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 5.1E-5 | 132 | 165 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.35E-7 | 139 | 164 | No hit | No description |
SMART | SM00355 | 140 | 144 | 164 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 488 aa Download sequence Send to blast |
MMSKQPFSPH SNTTMMKPSS SNNHLQQTNP NPNPNPPKKK RNLPGTPDPD SEVIAMSPKS 60 LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTN KEQIKKKVYV CPEKSCVHND 120 PCRALGDLTG IKKHYSRKHG EKKWKCEKCS KKYAVQSDWK AHSKICGTRE YKCDCGTIFS 180 RKDSFITHRA FCDALTDESA KITTVPAALS NFRNDHLTNP HHQAPRFPQI FPGFQFHSEF 240 VGSGTSSEPL GNYTNISDYS QKLRLQPLWS NSSCNTMNDL VQTMDVFGSQ TQFMSYTNSN 300 NNNNNNNNIC LPMLHHGVIL KQEEEEEENK DLSHSVISSM YLSSQNPVDN NLVFNNNNVN 360 HFGNIVEGQK FYKQSNHHEE LNELVNLEGG EYLLNDSNNS FGIVNCTKSL EFVVTEPVEK 420 ETSTTKRQMH DSSSRTKNQM GLTRDFLGVG EDSMSGPFLH QELSEFNGMG SSISNLQNQY 480 GGGHGHYC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 4e-36 | 140 | 205 | 3 | 68 | Zinc finger protein JACKDAW |
5b3h_F | 4e-36 | 140 | 205 | 3 | 68 | Zinc finger protein JACKDAW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004505969.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC139344 | 1e-150 | AC139344.17 Medicago truncatula clone mth2-34b22, complete sequence. | |||
GenBank | AC169979 | 1e-150 | AC169979.24 Medicago truncatula clone mth2-174m19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004505969.1 | 0.0 | zinc finger protein BALDIBIS | ||||
TrEMBL | A0A1S2YK24 | 0.0 | A0A1S2YK24_CICAR; zinc finger protein BALDIBIS | ||||
STRING | XP_004505969.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF181 | 34 | 275 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45260.1 | 4e-97 | C2H2-like zinc finger protein |