PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004505967.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | ARF | ||||||||
Protein Properties | Length: 808aa MW: 89884.8 Da PI: 6.9695 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.5 | 2.6e-23 | 172 | 273 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++ + s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F + ++ XP_004505967.1 172 FCKTLTVSDTSTHGGFSVPRRAAEDCfppldyKLQRP-SQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVNQKNLVSGDAVLFL--RGEN 263 99****************************9977754.569************************************************..4499 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ XP_004505967.1 264 GELRLGIRRA 273 999****996 PP | |||||||
2 | Auxin_resp | 118.6 | 5.1e-39 | 298 | 380 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 +a+a+stks+F+v+Y+Pras++eFvv+++k++k++k++vs+G+Rfk++fe+++s+err+ sG+ +g+sdldp+rWp+SkWr+L XP_004505967.1 298 VANAISTKSMFHVFYSPRASHAEFVVPYQKYVKSIKSPVSIGTRFKIRFEMDESPERRCnSGMLIGISDLDPYRWPKSKWRCL 380 689*******************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.31E-42 | 164 | 283 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.8E-39 | 166 | 283 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.54E-22 | 170 | 272 | No hit | No description |
SMART | SM01019 | 7.5E-24 | 172 | 274 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.6E-21 | 172 | 273 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.985 | 172 | 274 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.1E-33 | 298 | 380 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.6E-7 | 670 | 764 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 20.544 | 680 | 762 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 2.62E-9 | 682 | 759 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0010050 | Biological Process | vegetative phase change | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 808 aa Download sequence Send to blast |
MEIDLNHEVM MTEVENKNAL CIKECEKVSC CCCVCSLSPS TCSSSTSSTS PIVVSSSYLE 60 LWHACAGPLT SLPKKGNVVV YFPQGHLEQV ASFSPFTSLE IPTFDLQPQI FCRVVNIQLL 120 ANKENDEVYT QVTLLPQAEL AGMHMEAKEV EELEADEEGN EGLPTKSTPH MFCKTLTVSD 180 TSTHGGFSVP RRAAEDCFPP LDYKLQRPSQ ELVAKDLHGV EWKFRHIYRG QPRRHLLTTG 240 WSIFVNQKNL VSGDAVLFLR GENGELRLGI RRAVRPRNGL PESIVGKQNC YPNFLSSVAN 300 AISTKSMFHV FYSPRASHAE FVVPYQKYVK SIKSPVSIGT RFKIRFEMDE SPERRCNSGM 360 LIGISDLDPY RWPKSKWRCL MVRWDEDIET NHQDRVSPWE IDPSSSLPPL SIQSSPRLKK 420 PRTGLQVASP SHLITAAGGS GMMGFEESIR SSKVLQGQEN AGFMSLYYGC DKLTNKPGFE 480 LSSSSHQNLA LTGVGKAVTS SEHMNAHPFS YAAGFMETNS FPRVLQGQEI CKLKSLTQKV 540 DSNIGAWGNN PNVSCTNFNL RQATKPNFQS AYFPYGDIYK NGQANMFTSK HMNFQSDNVS 600 FSTPSILAGN IRNEVGRSEL NLPNEDKLQD NISASVSLGA TNIKVPNDNN VKGKVNSCKL 660 FGFPLSAETS SQNLQNTAKR SCTKVHKQGS LVGRAVDLSR LNCYVDLLSE LEKLFGMEGL 720 LRDHDKGWRI LYTDSENDIM VVGDDPWHEF CDVVSKIHIY TKGEVEKMTF GMTNDDTHSS 780 LEQAPVIMEP SKSSSVSQTD YSPTVVRV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-120 | 42 | 406 | 2 | 357 | Auxin response factor 1 |
4ldw_A | 1e-120 | 42 | 406 | 2 | 357 | Auxin response factor 1 |
4ldw_B | 1e-120 | 42 | 406 | 2 | 357 | Auxin response factor 1 |
4ldx_A | 1e-120 | 42 | 406 | 2 | 357 | Auxin response factor 1 |
4ldx_B | 1e-120 | 42 | 406 | 2 | 357 | Auxin response factor 1 |
4ldy_A | 1e-120 | 42 | 406 | 2 | 357 | Auxin response factor 1 |
4ldy_B | 1e-120 | 42 | 406 | 2 | 357 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004505967.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004505967.1 | 0.0 | auxin response factor 4 isoform X1 | ||||
Swissprot | Q9ZTX9 | 0.0 | ARFD_ARATH; Auxin response factor 4 | ||||
TrEMBL | A0A1S2YK13 | 0.0 | A0A1S2YK13_CICAR; Auxin response factor | ||||
STRING | XP_004505967.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5236 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | auxin response factor 4 |