PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004505871.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family Dof
Protein Properties Length: 325aa    MW: 35743.5 Da    PI: 9.6442
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004505871.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.12e-3875133361
          zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                     e alkcprCdstntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+n+k+
  XP_004505871.1  75 EPALKCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNNKK 133
                     6789***************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-2158127IPR003851Zinc finger, Dof-type
PfamPF027014.2E-3277132IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.44178132IPR003851Zinc finger, Dof-type
PROSITE patternPS01361080116IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MVFSSIPGYI DPPNWHQQQN HHLQGNGSDN NTQLLPPLPP QVGGSTGVGG GNIIGSIRPN  60
SMADRARLAK LPPPEPALKC PRCDSTNTKF CYFNNYSLTQ PRHFCKTCRR YWTRGGALRN  120
VPVGGGCRRN NKKNKRSRSK SPSTATNSEK LQTTSANIPS SHHEIIGQLP PHQITNLPFM  180
ASLQNLSRYT VGNMNLGNLQ QQQETDHMGF QIGSVSAGNN NIGVEQQWRN LQQFPFLNTF  240
ESSNSAGNNS YPFQGESNIE ASASVFVGDT GSNSRVNNNT QQPPVKMEEN GGLNLSRTSL  300
GITEHNQQYF SWNDLSGSST NHHLL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004505871.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004505871.10.0dof zinc finger protein DOF3.6-like
TrEMBLA0A1S2YK750.0A0A1S2YK75_CICAR; dof zinc finger protein DOF3.6-like
STRINGXP_004505871.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.26e-32OBF-binding protein 3