PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004505853.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

GRAS

Protein Properties

Length: 716aa MW: 81999.1 Da PI: 5.7949

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004505853.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	371.8	9e-114	339	713	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lLl c + v ++d+ +a++lL+++++++sp gd+ qRla+yf+++L+arl++ ++++ + ++++ +++e l+a+++ +sP+ kf++ XP_004505853.1 339 LRNLLLLCSQSVYANDNLNANELLKQIRQHSSPFGDAPQRLAHYFANGLEARLVGDGTGVQTFYSLLSSKRISTAEFLKAYQVHLSTSPFKKFAY 433 6899*************************************************999999888888888888****************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 + a ++Il+ ++++e++HiiDf+i +G+QWp L++ L++R++gpp+lRiTg++ p +g e+++etg+rLa+++++++vpfefn+++++++e+ XP_004505853.1 434 FFATKMILKVASKAETLHIIDFGILYGFQWPILIKFLSDREGGPPKLRITGIEFPLHGfrPMERVQETGRRLANYCKRFNVPFEFNAIASRNWEK 528 **************************************************99999************************9999 PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 +++e+L+++++E++aVn+ ++ ++lldes + +s+r++vL+l+++++P++++ + + ++ns+ F++rf eal ++sa+fd+l++ +pre+e r+ XP_004505853.1 529 IRVEDLKINSNEVVAVNSLMRFKNLLDESIEANSPRNAVLHLIRKINPDIFTQSIVNGSYNSPFFATRFREALFHFSAIFDMLDTVIPRENEYRM 623 ******************************************************************************************* PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ++Ere +gre++nvvaceg +r+er et+++W+ r ++aGFk++pl+++ +++ ++ lr+ + + + +++++++++gWk+r L++ ++W XP_004505853.1 624 MMERESFGREAMNVVACEGLQRVERPETYKQWQVRNTRAGFKQLPLNSELMAKFRTKLRQWYHKDFVFDDDNNWMLQGWKGRILYASTCW 713 **********************************************************888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.724	313	694	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.1E-111	339	713	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 716 aa Download sequence Send to blast
MDPNFSLASN FIKDYYNNFD EEGSNPNQYK TSFDEYKKYE NLLDADPLGF DANMIPIEGS 60 MVTDPSLEDT DFSETGKFIS QILMEENVDQ RPFYDPLDLQ ITERSFYDAL LHQKPLSPNQ 120 HPLDIHNHTH NSDGSNSNSS LDSKPTSPDT PVSDIANHGF QFNSSAIPRT FSQPSSESVG 180 DGLRDLNSSI TNLLVQNIFS DADSVSQFRK GLEEASKFLP PQPQLLTGLE SSNFNMDGEK 240 ENLFVLKGRK NHKREESYSE EEEEEGRRSN KQSAVGVVDE DELSDMFDKV LLNVEHLPLC 300 NENDSLKNGL VKTEEPPPSN GAKARPKKQG RKKNETIDLR NLLLLCSQSV YANDNLNANE 360 LLKQIRQHSS PFGDAPQRLA HYFANGLEAR LVGDGTGVQT FYSLLSSKRI STAEFLKAYQ 420 VHLSTSPFKK FAYFFATKMI LKVASKAETL HIIDFGILYG FQWPILIKFL SDREGGPPKL 480 RITGIEFPLH GFRPMERVQE TGRRLANYCK RFNVPFEFNA IASRNWEKIR VEDLKINSNE 540 VVAVNSLMRF KNLLDESIEA NSPRNAVLHL IRKINPDIFT QSIVNGSYNS PFFATRFREA 600 LFHFSAIFDM LDTVIPRENE YRMMMERESF GREAMNVVAC EGLQRVERPE TYKQWQVRNT 660 RAGFKQLPLN SELMAKFRTK LRQWYHKDFV FDDDNNWMLQ GWKGRILYAS TCWVPA

Sequence ? help Back to Top

Protein Sequence Length: 716 aa Download sequence Send to blast

MDPNFSLASN FIKDYYNNFD EEGSNPNQYK TSFDEYKKYE NLLDADPLGF DANMIPIEGS  60
MVTDPSLEDT DFSETGKFIS QILMEENVDQ RPFYDPLDLQ ITERSFYDAL LHQKPLSPNQ  120
HPLDIHNHTH NSDGSNSNSS LDSKPTSPDT PVSDIANHGF QFNSSAIPRT FSQPSSESVG  180
DGLRDLNSSI TNLLVQNIFS DADSVSQFRK GLEEASKFLP PQPQLLTGLE SSNFNMDGEK  240
ENLFVLKGRK NHKREESYSE EEEEEGRRSN KQSAVGVVDE DELSDMFDKV LLNVEHLPLC  300
NENDSLKNGL VKTEEPPPSN GAKARPKKQG RKKNETIDLR NLLLLCSQSV YANDNLNANE  360
LLKQIRQHSS PFGDAPQRLA HYFANGLEAR LVGDGTGVQT FYSLLSSKRI STAEFLKAYQ  420
VHLSTSPFKK FAYFFATKMI LKVASKAETL HIIDFGILYG FQWPILIKFL SDREGGPPKL  480
RITGIEFPLH GFRPMERVQE TGRRLANYCK RFNVPFEFNA IASRNWEKIR VEDLKINSNE  540
VVAVNSLMRF KNLLDESIEA NSPRNAVLHL IRKINPDIFT QSIVNGSYNS PFFATRFREA  600
LFHFSAIFDM LDTVIPRENE YRMMMERESF GREAMNVVAC EGLQRVERPE TYKQWQVRNT  660
RAGFKQLPLN SELMAKFRTK LRQWYHKDFV FDDDNNWMLQ GWKGRILYAS TCWVPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	5e-52	346	715	25	379	Protein SCARECROW
5b3h_D	5e-52	346	715	25	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004505853.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004505853.1	0.0	scarecrow-like protein 34
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A1S2YJS7	0.0	A0A1S2YJS7_CICAR; scarecrow-like protein 34
STRING	XP_004505853.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]