PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004505604.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family E2F/DP
Protein Properties Length: 343aa    MW: 37901.4 Da    PI: 5.3132
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004505604.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.31.2e-2792174271
         E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  XP_004505604.1  92 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpinsvlspdkqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 174
                     689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094041.5E-1294343IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.107.9E-4687179IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.9E-3491174IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.1E-2593174IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.77E-2194175IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144583.31E-43179282IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440743.92E-42180294No hitNo description
SMARTSM011387.4E-70181341IPR014889Transcription factor DP, C-terminal
PfamPF087811.1E-40182295IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGTRPQQSCV DEEDEELLGC GTTMSGQSGS TSRSAGFPSS RSEQTTGTAA GDNAALKLNH  60
LDIHDDDAGS QGVVASKKKK RGQQRAVGGD KSGRGLRQFS MKVCEKVESK GRTTYNEVAD  120
ELVAEFADPI NSVLSPDKQQ YDEKNIRRRV YDALNVLMAM DIISKDKKEI QWKGLPRTSL  180
NDIEELKTER LGLRNRIERK ASYLQELEEQ FVGLQNLIQR NEQLYSSGNP PSGGVSLPFI  240
LVQTRPHATV EVEISEDMQL VHFDFNSTPF ELHDDNYVLK AMEFGDRPQS DTVTLNVTDG  300
GECSSMSVLH QSQVPPSVSS LPIRIPTSPP LPGILKARVK QEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B4e-3585179193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004505604.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004505604.10.0transcription factor-like protein DPB
SwissprotQ9FNY21e-150DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A1S2YJ920.0A0A1S2YJ92_CICAR; transcription factor-like protein DPB
STRINGXP_004505604.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33213366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-145Transcription factor DP