PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004505582.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C3H | ||||||||
Protein Properties | Length: 375aa MW: 41150.4 Da PI: 7.0633 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.2 | 3.8e-10 | 4 | 25 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 Cr+f+r G C+yG+rC++ H++ XP_004505582.1 4 VCRNFQR-GSCSYGERCRYLHVQ 25 7******.*************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 3.7E-4 | 1 | 25 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.38E-5 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-7 | 3 | 25 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.5E-8 | 4 | 25 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.122 | 4 | 26 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005635 | Cellular Component | nuclear envelope | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MKDVCRNFQR GSCSYGERCR YLHVQQQPQR KSNNVNGFGG QPNSQQHPNT NPFGFGSASS 60 ASQQQQKTNP FGFGNQNTNQ LNGKPNQFQP FENKWSRSSS KPQNGTPRQS DNHSQTVNHK 120 CTDPEVCKRQ IAEDFEQEKP LWTLTCYGHC KGAPCDIVGD ISYEELRAAA YEDAKNGMNL 180 QSIVEKERNI LKSKLVEFEK LLSEPYKMPL NSSIDIQKHQ SNGANANAFS LATQNNGPLA 240 VSSFSQLGAS MNTGFERPAA APLMATPVQP SSFGNGGNFF TSNTENLFGS GILGGQSTPF 300 STPAELTMFP GSTSQPQQPS FAFNNTSSTT MLPTASDVLN TSQVENVSGD VSIWLKEKWN 360 PGEIPEEAPP DRFVR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004505582.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT143349 | 1e-138 | BT143349.1 Medicago truncatula clone JCVI-FLMt-18J14 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004505582.1 | 0.0 | zinc finger CCCH domain-containing protein 16 | ||||
TrEMBL | A0A1S2YJL4 | 0.0 | A0A1S2YJL4_CICAR; zinc finger CCCH domain-containing protein 16 | ||||
STRING | XP_004505582.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4600 | 23 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75340.1 | 6e-78 | C3H family protein |