PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004505556.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C3H | ||||||||
Protein Properties | Length: 331aa MW: 37772.4 Da PI: 7.873 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.2 | 5.9e-08 | 100 | 122 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 e C++++r G C +Gd C F+Hg XP_004505556.1 100 GEVCPDYRR-GNCERGDACEFSHG 122 689******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.399 | 97 | 124 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-6 | 97 | 123 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.42E-5 | 98 | 122 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-5 | 100 | 124 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.1E-6 | 101 | 122 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.258 | 132 | 156 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.8 | 132 | 155 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MSGILCEEQQ KLLLSLKKSL TLRDKIDIDN TPPRKLLARR QPAADMLPDE DPYSSDQFRM 60 YEFKVRRCTR SRSHDWTDCP FAHPGEKARR RDPLKYQYSG EVCPDYRRGN CERGDACEFS 120 HGVFECWLHP SRYRTEACKD GKNCKRKICF FAHTPRQLRV LLLTPPQHNN NNNNNNKKSH 180 NNNNCCSYCH CCSANSSPTS TLFSGSHFSK SNSPPLSPSS SSSSPTTLSR YSKNMHVLNE 240 LMRSIELESA LNSPVSATKL PWLDVNVSDQ YSPFGCEDHS QNHVIDVLPT MNCGKYYSSD 300 DAEFVREQRK VVGDDDVIAV PDFGWVNDLL M |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004505556.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004505556.1 | 0.0 | zinc finger CCCH domain-containing protein 61 | ||||
TrEMBL | A0A1S2YJ43 | 0.0 | A0A1S2YJ43_CICAR; zinc finger CCCH domain-containing protein 61 | ||||
STRING | XP_004505556.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6261 | 26 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03790.1 | 1e-68 | C3H family protein |