PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004505518.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | TCP | ||||||||
Protein Properties | Length: 352aa MW: 39417.9 Da PI: 6.9427 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 109 | 7.1e-34 | 22 | 119 | 2 | 105 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaak 96 +gkkdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak++i++l++++ ++s+ ++ ++++ + ++ ++s XP_004505518.1 22 TGKKDRHSKVYTSKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAKHSIDKLADLPPWHPSSDNQTQQQQ-----NVAAGSTSLV- 110 79**************************************************************433331111112222.....2221122221. PP TCP 97 skksqksaa 105 ++q++++ XP_004505518.1 111 IGEQQSQSN 119 111111111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.0E-30 | 22 | 131 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.926 | 24 | 82 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MRRSSRGGEI VEVEGGHIVR STGKKDRHSK VYTSKGPRDR RVRLSAHTAI EFYDVQDRLG 60 YDRPSKAVDW LIKKAKHSID KLADLPPWHP SSDNQTQQQQ NVAAGSTSLV IGEQQSQSNS 120 GYNFHLLRHF TDNQCDNNNS SFISQHAVET DPIPFFPTTS STSQPINFQT YPHHHGIIST 180 NNIHSTQDLG LSLHSFQDHN GLINPWQSQQ QDCQNHATSN QNQTLFAGFE NQYQRIVNWN 240 SETTTDYVKK VGFMVNSQQF LPHGSTSASE YSPNETLQSN FSPSVRSWND IPMASSEHHR 300 TEQVHQASIF GSRFVCDGLA GFCVPDTVQG DEEGHGVSSN RPSSASPTSH HH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 5e-22 | 29 | 82 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 5e-22 | 29 | 82 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004505518.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004505518.1 | 0.0 | transcription factor TCP4 | ||||
TrEMBL | A0A1S2YJM2 | 0.0 | A0A1S2YJM2_CICAR; transcription factor TCP4 | ||||
STRING | XP_004505518.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53230.1 | 1e-46 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 |