PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004505494.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family Trihelix
Protein Properties Length: 302aa    MW: 33869.9 Da    PI: 9.7652
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004505494.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.89.2e-1630123187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     +W+++ + +Li+a  e   +l+rg+l++++W+ev++++         r+ +r+ +qCk++++ l+k+yk +k++ ++   + +s +++f++l+a
  XP_004505494.1  30 CWSEDATFTLIDAWGEHYLDLNRGNLRQKHWQEVADAVndihaagNNRKARRTDVQCKNRIDTLKKKYKIEKARVSETDGGYQSPWSFFSRLDA 123
                     7********************************************99*****************************99999999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-2528124No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDSIHGAPSH LTSAPPRPPS VSPFTGREDC WSEDATFTLI DAWGEHYLDL NRGNLRQKHW  60
QEVADAVNDI HAAGNNRKAR RTDVQCKNRI DTLKKKYKIE KARVSETDGG YQSPWSFFSR  120
LDALIGDTFP IKKLSPPANV RTTPAAVKPP PLPPPPAWII SHPVGPRSGT QKRPALANRD  180
DASFRRNFSA FAAAAAAAAE AESEESEEWR SSSGTGSGKK GKESDKNLEF GFRELAQAIE  240
RFGDIYERVE DAKQRQMVEL EKQRMQFAKD LEFQRMQLFM ETQVQLQKIK RSKRSSGSDS  300
LS
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004505494.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004505494.10.0trihelix transcription factor ASIL1-like isoform X2
SwissprotQ9LJG83e-35ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A1S2YIZ80.0A0A1S2YIZ8_CICAR; trihelix transcription factor ASIL1-like isoform X2
STRINGXP_004505493.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.13e-49sequence-specific DNA binding transcription factors