PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004505493.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | Trihelix | ||||||||
Protein Properties | Length: 303aa MW: 33941 Da PI: 9.7652 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 49.8 | 9.3e-16 | 30 | 123 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +W+++ + +Li+a e +l+rg+l++++W+ev++++ r+ +r+ +qCk++++ l+k+yk +k++ ++ + +s +++f++l+a XP_004505493.1 30 CWSEDATFTLIDAWGEHYLDLNRGNLRQKHWQEVADAVndihaagNNRKARRTDVQCKNRIDTLKKKYKIEKARVSETDGGYQSPWSFFSRLDA 123 7********************************************99*****************************99999999*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.1E-25 | 28 | 124 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MDSIHGAPSH LTSAPPRPPS VSPFTGREDC WSEDATFTLI DAWGEHYLDL NRGNLRQKHW 60 QEVADAVNDI HAAGNNRKAR RTDVQCKNRI DTLKKKYKIE KARVSETDGG YQSPWSFFSR 120 LDALIGDTFP IKKLSPPANV RTTPAAVKPP PLPPPPAWII SHPVGPRSGT QKRPALANRD 180 DASFRRNFSA FAAAAAAAAE AESEESEEWR SSSGTGSGKK GKESDKNLEF GFRELAQAIE 240 RFGDIYERVE DAKQRQMVEL EKQRMQFAKD LEFQRMQLFM ETQVQLQKIK RSKRSSGSAD 300 SLS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00413 | DAP | Transfer from AT3G58630 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004505493.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004505493.1 | 0.0 | trihelix transcription factor ASIL1-like isoform X1 | ||||
Swissprot | Q9LJG8 | 3e-35 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A1S2YJK5 | 0.0 | A0A1S2YJK5_CICAR; trihelix transcription factor ASIL1-like isoform X1 | ||||
STRING | XP_004505493.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1887 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58630.1 | 3e-49 | sequence-specific DNA binding transcription factors |