PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004505417.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | G2-like | ||||||||
Protein Properties | Length: 332aa MW: 37311.9 Da PI: 5.9081 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 98 | 6.7e-31 | 20 | 74 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH+rF ea++qLGG+ekAtPk+++++m+++gLtl+h+kSHLQkYRl XP_004505417.1 20 KPRLKWTPELHQRFAEAIHQLGGAEKATPKSLMRAMGIPGLTLYHLKSHLQKYRL 74 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-29 | 18 | 76 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.16E-15 | 19 | 75 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.3E-22 | 20 | 75 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.3E-9 | 22 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.9E-21 | 117 | 162 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MDQKNVQNQS MRLVLSTDAK PRLKWTPELH QRFAEAIHQL GGAEKATPKS LMRAMGIPGL 60 TLYHLKSHLQ KYRLGKSQLL ETCSDNKQDY VEIQSSDSQC SREISVENQN QTSESLKISE 120 ALQIQMEVQK KLYEQIEVQK HLQFRIEAQG KYLQSVLMKA QEALAGYSSS STVGVEHAKA 180 ELSQLLSIIN NACPSSPISE LTETRGLSLN FGERKQNRGT MCSLESSLTS SESSERKDEK 240 HFINEAENIP NCNSVSVELP LLAIHPEDEG SGRKRSAETD FDDSCVDQPE GKRCAKKLRK 300 FELSQMLDLN SKYERDIDSC SSEIDLNCSS SF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-19 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-19 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-19 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-19 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-19 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-19 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-19 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-19 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004505417.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004505417.1 | 0.0 | myb family transcription factor PHL8-like | ||||
Swissprot | F4I274 | 3e-83 | PHL8_ARATH; Myb family transcription factor PHL8 | ||||
TrEMBL | A0A1S2YIT5 | 0.0 | A0A1S2YIT5_CICAR; myb family transcription factor PHL8-like | ||||
STRING | XP_004505417.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5218 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69580.1 | 1e-83 | G2-like family protein |
Publications ? help Back to Top | |||
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