PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004505416.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

Dof

Protein Properties

Length: 465aa MW: 51100.7 Da PI: 7.4158

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004505416.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.5	7.1e-39	114	173	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k ++cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ XP_004505416.1 114 PDKVVPCPRCNSMETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNP 173 78999****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	101	171	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.9E-31	115	172	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.593	118	172	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	120	156	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MTEIKDSAIK LFGRTISLPL NPNDSSSPSS PTQLNSAIQH EPEEPSRKEL TTVQDDDASQ 60 QTTEDLKSPT TSSAILENPP KTPSAETESS LPKSSTNGEQ SETSVSEEKT LKKPDKVVPC 120 PRCNSMETKF CYFNNYNVNQ PRHFCKNCQR YWTAGGTMRN VPVGAGRRKN KNPSTSHYRH 180 LMIPEAAKLS SPNGLHNSVL GNGAAVLAFD SDSPLCNTMA SVLNIAERHQ NRMPNVFHHA 240 TEPNTFVSYG GENDHSITTP TLSERKDHTG SNGSMDKRVD GFPPQLQYIP STLLPYPWNP 300 AIPPPTFCPP SYPLAFYTPP PYFGCMPPSW NISCISPQST SSVNHCDSLH RSIPYSPTLG 360 KHSRDGNIIT PQNEKHDQEH SNTESSVLIP KTLRFDDPSE AAKSSLWSKL GINNDKANSI 420 NGGTMFNAFQ SKGKDKNHSV EAAASTLMYA NPAALSRSRT FHEQT

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MTEIKDSAIK LFGRTISLPL NPNDSSSPSS PTQLNSAIQH EPEEPSRKEL TTVQDDDASQ  60
QTTEDLKSPT TSSAILENPP KTPSAETESS LPKSSTNGEQ SETSVSEEKT LKKPDKVVPC  120
PRCNSMETKF CYFNNYNVNQ PRHFCKNCQR YWTAGGTMRN VPVGAGRRKN KNPSTSHYRH  180
LMIPEAAKLS SPNGLHNSVL GNGAAVLAFD SDSPLCNTMA SVLNIAERHQ NRMPNVFHHA  240
TEPNTFVSYG GENDHSITTP TLSERKDHTG SNGSMDKRVD GFPPQLQYIP STLLPYPWNP  300
AIPPPTFCPP SYPLAFYTPP PYFGCMPPSW NISCISPQST SSVNHCDSLH RSIPYSPTLG  360
KHSRDGNIIT PQNEKHDQEH SNTESSVLIP KTLRFDDPSE AAKSSLWSKL GINNDKANSI  420
NGGTMFNAFQ SKGKDKNHSV EAAASTLMYA NPAALSRSRT FHEQT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004505416.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004505416.1	0.0	cyclic dof factor 1
TrEMBL	A0A1S2YJ91	0.0	A0A1S2YJ91_CICAR; cyclic dof factor 1
STRING	XP_004505416.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-87	cycling DOF factor 2