PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004505415.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 432aa    MW: 48863 Da    PI: 5.9414
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004505415.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-16112157147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
   XP_004505415.1 112 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 157
                      899*****************************.***********996 PP
2Myb_DNA-binding55.51.3e-17164207146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ 
   XP_004505415.1 164 RRAFSEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 207
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.17107158IPR017930Myb domain
SMARTSM007172.9E-14111160IPR001005SANT/Myb domain
PfamPF002499.0E-16112157IPR001005SANT/Myb domain
SuperFamilySSF466898.24E-28112205IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-25113165IPR009057Homeodomain-like
CDDcd001674.82E-13115156No hitNo description
PROSITE profilePS5129426.929159213IPR017930Myb domain
SMARTSM007171.8E-14163211IPR001005SANT/Myb domain
PfamPF002492.5E-14164206IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-20166212IPR009057Homeodomain-like
CDDcd001671.39E-11166206No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MNTYSSSPSM GMVYQNMSSL SLSSSNNYAA SSSSQHCYLS NQGTSANWSL PFMRECCVTE  60
ENNNSDVGDG NASDSADAVA ENSDKIINFS EDNNPNDSGK EVNTEHSKLC ARGHWRPAED  120
SKLKELVALY GPQNWNLIAE KLEGRSGKSC RLRWFNQLDP RINRRAFSEE EEERLMQAHR  180
IYGNKWAMIA RLFPGRTDNA VKNHWHVIMA RKYREQSSAY RRRRLNQSVY RRMEEDNTSF  240
VSRDLVTGGI EPMAPPYCIT LPNGTLGFNM ATFPYSPSFH GVVDATNEPI STNKHVLTPP  300
IGLYSQQTPL DFFSGVRRND MMGEYYNNQM RCWDRPNDCS HHQTNTSLYT HYPPQYIMPI  360
QEENKNHNNN FDSSSKSTTA TTRKPVSQII LGSEVSLSTV AEEREQILMM SDDEADGDAN  420
PPFIDFLGVG AT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-331122127107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219224YRRRRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004505415.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1400301e-128AC140030.6 Medicago truncatula clone mth2-7g24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004505415.10.0myb-like protein A
SwissprotQ9SEZ45e-75MY105_ARATH; Transcription factor MYB105
TrEMBLA0A1S2YIS10.0A0A1S2YIS1_CICAR; myb-like protein A
STRINGXP_004505415.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-76myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]