PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004505370.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 513aa    MW: 57431 Da    PI: 8.6796
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004505370.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013109129323
                     ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                     C+ Cgk F++   L  H+ +H
  XP_004505370.1 109 CKECGKGFPSLKALCGHMASH 129
                     ******************999 PP
2zf-C2H212.20.00054461483123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+Cp+C k F++   L  H r+H
  XP_004505370.1 461 YECPICYKIFRSGQALGGHKRSH 483
                     99******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.9E-4331IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.03E-8428No hitNo description
PfamPF139126.7E-7631IPR007087Zinc finger, C2H2
SMARTSM003550.79628IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.616633IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SuperFamilySSF576674.03E-8102129No hitNo description
PROSITE profilePS501579.951107134IPR007087Zinc finger, C2H2
SMARTSM003550.063107129IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
PfamPF139122.4E-7109131IPR007087Zinc finger, C2H2
SuperFamilySSF576672.99E-5458484No hitNo description
PROSITE profilePS501579.93461483IPR007087Zinc finger, C2H2
PfamPF139128.0E-11461483IPR007087Zinc finger, C2H2
SMARTSM003550.11461483IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280463483IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MEDRKFVCKY CLKRFPCGKS LGGHIRTHMS EERNNAAASA SASASASASA AAYSDIFKFD  60
CVKKKRDLAS EEAVGGNGNP IYGLRENPKK TTRFVHSATT LENEMIKFCK ECGKGFPSLK  120
ALCGHMASHS EKEKKIDKEK LVIDTDESDD DDDNDDNTDD DDDTCDTTTT MNLRKSKRMR  180
FKSLTFSNLQ SSSVNGSSSV SEVEQEQEEV AMCLMLLSKD FSQKGRFGSE SSDNNSVVLE  240
TKSKASSHAA AKIVIRKNGS NKFVSNNDVH EFVENKKKVV KDMKLKSVVG IGVSNDSDSR  300
NFRYSSKIKF LESSNASNCE FKRPKMEEEK SGFDDFRRSK CNVTMFKKSG VKDLDHSVKK  360
NESTARKIDS RKKDNYEEGF GFKNNEKSNE NGRKSWKYEC FDSEKKDNDC YDYSTSEESD  420
ENSSESDSFT AAKSHHNNKA VKRKKSSKGK KKLKSKKSKE YECPICYKIF RSGQALGGHK  480
RSHFVGGSEE NTLVIKQGAP CLIDLNLPAP IDE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1441453KRKKSSKGKKKLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004505370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004505370.10.0dentin sialophosphoprotein-like
TrEMBLA0A1S2YIQ40.0A0A1S2YIQ4_CICAR; dentin sialophosphoprotein-like
STRINGXP_004505370.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-27C2H2-like zinc finger protein