PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_004505238.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 283aa MW: 31562.7 Da PI: 7.1101 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.6 | 1.7e-11 | 73 | 116 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er RR+++++ f+ L llP++ p K +K++i+ Av++Ik+Lq XP_004505238.1 73 TERERRKKMRNMFSGLHALLPQL---P-SKADKSTIVDAAVKHIKNLQ 116 6*********************6...3.8******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.79E-15 | 65 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.148 | 65 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-14 | 69 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.24E-12 | 70 | 117 | No hit | No description |
Pfam | PF00010 | 7.8E-9 | 73 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.5E-8 | 73 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 283 aa Download sequence Send to blast |
MAMSVDHDEG VHLGLVWENE AVDLTNSDTS GESSKQKLEM KAMREKEGIK KRSDGEGKDG 60 KYRDSDHEIH IWTERERRKK MRNMFSGLHA LLPQLPSKAD KSTIVDAAVK HIKNLQQTLE 120 KLEKEKEKRL KSVSSFGSES SIINSHWHPY ESREAIIADQ GSSNYNFPSN AIVTSNPSNA 180 FSTPPPQVAF QTWSSQNVVL NICGGEAQFC ICATKKPGLM TTIAFVLEKH RIDVISANIV 240 CNGNGNFYMI LAHAKQASHQ LQDANSMEET YKQAAGEIMI LIS |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_004505238.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC148528 | 1e-139 | AC148528.15 Medicago truncatula clone mth2-53h4, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004505238.1 | 0.0 | transcription factor bHLH95 | ||||
TrEMBL | A0A1S2YIW1 | 0.0 | A0A1S2YIW1_CICAR; transcription factor bHLH95 | ||||
STRING | XP_004505238.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4773 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G49770.1 | 7e-46 | bHLH family protein |