PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_004505103.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 725aa MW: 80380.8 Da PI: 6.7859 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 78.5 | 6.9e-25 | 148 | 249 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae++ + ++ s++l+ +d++g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + + XP_004505103.1 148 FCKTLTASDTSTHGGFSVPRRAAEDCfppldytQ--TRPSQELVAKDLHGQEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGE 238 99****************************8543..455679************************************************..449 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++el+++++r+ XP_004505103.1 239 DGELRLGIRRA 249 999*****996 PP | |||||||
2 | Auxin_resp | 113.6 | 1.9e-37 | 274 | 355 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+st+++F++ YnPr+++seF+v+++k++k+l+ ++svGmRf+m+fe+ed++err++G+++g++d+dp rWp+SkW++L XP_004505103.1 274 VVNALSTRCAFSIHYNPRVGSSEFIVPIQKFLKSLDYSYSVGMRFRMRFESEDAAERRFAGLIIGITDVDPARWPGSKWKCL 355 6899*****************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.09E-42 | 141 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.9E-41 | 142 | 251 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.81E-23 | 146 | 248 | No hit | No description |
PROSITE profile | PS50863 | 13.648 | 148 | 250 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-23 | 148 | 250 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.5E-23 | 148 | 249 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.4E-32 | 275 | 355 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 725 aa Download sequence Send to blast |
MTGLIDLNTT EDDETPSSGS SSNTSIGSTF LGSGSGSSVC LELWHACAGP MISLPKKGSV 60 VVYFPQGHLE HLHDFPLSFS DNIPSHVFCR VVDVKLHAEE GSDEVYCQVL LVPESEQMQQ 120 KLREGEDDAD GEGEDAEAVM KSTTPHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYT 180 QTRPSQELVA KDLHGQEWRF RHIYRGQPRR HLLTTGWSAF VNKKKLVSGD AVLFLRGEDG 240 ELRLGIRRAA QLKSCSNFSS LSGQQFNLGS LTDVVNALST RCAFSIHYNP RVGSSEFIVP 300 IQKFLKSLDY SYSVGMRFRM RFESEDAAER RFAGLIIGIT DVDPARWPGS KWKCLVVRWD 360 DMEVSRHNRV SPWEIEPSGS ASTTNSLMAA SLKRTKIGLP SSKLEFPVPN GIGASDFGES 420 LRFQKVLQGQ EILGVDTTFD SISAQRHHLS ELRRCYPGSN CHGIATTGNS IRMQQMNSDV 480 SCNGFGESFR FPKVLQGQEI LPSQPYGRAF SVDEACRNGR FGLFDGHHML RSTNEWSYSS 540 QMNNKAHLHP SGQVSSPPSV LMYQHTVNPV SNFSYNNNID QVMEDRVHQR GSFYTSEVKG 600 GTFASTPSYE PSFRGPQNNT NSFSTQHSHD SISLQRGSQE LVSTCKSSCR VFGFSLTEGA 660 PLASKETEPS AVTCQINPGP SSFTRHVEDD FNPRHLLRSN AVESYCTKVS NLHPVRDMVI 720 DRVLF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-115 | 20 | 382 | 2 | 359 | Auxin response factor 1 |
4ldw_A | 1e-115 | 20 | 382 | 2 | 359 | Auxin response factor 1 |
4ldw_B | 1e-115 | 20 | 382 | 2 | 359 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in the establishment or elaboration of tissue patterning during gynoecial development. {ECO:0000269|PubMed:10952886, ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_004505103.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by AHL21/GIK. {ECO:0000269|PubMed:19956801}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004505103.1 | 0.0 | auxin response factor 3 isoform X1 | ||||
Swissprot | O23661 | 0.0 | ARFC_ARATH; Auxin response factor 3 | ||||
TrEMBL | A0A1S2YIR9 | 0.0 | A0A1S2YIR9_CICAR; Auxin response factor | ||||
STRING | XP_004505103.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4576 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33860.1 | 0.0 | ARF family protein |