PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004505050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | HSF | ||||||||
Protein Properties | Length: 202aa MW: 23642 Da PI: 7.7672 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 108.3 | 5.9e-34 | 32 | 121 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl k+y++le+ +e++sw+e+gn+fvv+ + ef++ Lp+yFkh+nf+SF+RQLn+YgFkk+++++ weF+h++F+kg k++l + XP_004505050.1 32 FLLKTYDLLEE--HSEIVSWNEQGNAFVVWSPAEFSELTLPRYFKHNNFSSFIRQLNTYGFKKISSKR---------WEFQHEKFQKGCKHMLVE 115 9********97..679*************************************************999.........****************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i rkk XP_004505050.1 116 ISRKKC 121 ***986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 1.5E-42 | 28 | 119 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 6.3E-35 | 29 | 114 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.85E-29 | 29 | 119 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 5.3E-30 | 32 | 119 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-9 | 68 | 80 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 69 | 93 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-9 | 81 | 93 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MGENVMELNF GSLANFSSSS SSPKPLRCPA PFLLKTYDLL EEHSEIVSWN EQGNAFVVWS 60 PAEFSELTLP RYFKHNNFSS FIRQLNTYGF KKISSKRWEF QHEKFQKGCK HMLVEISRKK 120 CEPSVFPSYL KSCSEENAMT NSSVEENISN NHELLMEENK NLKKERLKLQ MQIEECKTLE 180 MKLLECLSQY MDSQQNKARR LC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hdk_A | 4e-17 | 28 | 119 | 7 | 110 | Heat shock factor protein 2 |
5hdk_B | 4e-17 | 28 | 119 | 7 | 110 | Heat shock factor protein 2 |
5hdk_C | 4e-17 | 28 | 119 | 7 | 110 | Heat shock factor protein 2 |
5hdk_D | 4e-17 | 28 | 119 | 7 | 110 | Heat shock factor protein 2 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004505050.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004505050.1 | 1e-147 | heat stress transcription factor B-2a | ||||
TrEMBL | A0A1S2YHX3 | 1e-145 | A0A1S2YHX3_CICAR; heat stress transcription factor B-2a | ||||
STRING | XP_004505050.1 | 1e-146 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11357 | 28 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36990.1 | 5e-39 | heat shock factor 4 |