PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004505012.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

Dof

Protein Properties

Length: 304aa MW: 34157.3 Da PI: 8.5493

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004505012.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	113.9	6.8e-36	48	107	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e+ lkcprC+stntkfCyynny+ sqPr+fC+aC+r+WtkGG+lrnvPvGggr++++ + XP_004505012.1 48 TEQVLKCPRCESTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRVK 107 67899***********************************************97766544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-20	49	96	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.3E-32	50	104	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.335	52	106	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	54	90	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MGLSSKQVSS SGLDNWKQNL LESQDLELPK PHHMMRKHHQ QQQQQQQTEQ VLKCPRCEST 60 NTKFCYYNNY NKSQPRHFCR ACKRHWTKGG TLRNVPVGGG RKNKRVKKSN TPITSSTTKT 120 TTTATNAICT PSISNMNGNG LNSNMTIQTP LGISDQKSNN IPSSLYQALI HPPSLFLQQS 180 LMNTRDLLES KDFGIGNGIF TSTSCSTYPI LPQNQSLLFP FSTSSSFDTT TCPSSNVYYY 240 GEEFKTMEEP TINSIVPSTK PWEMSLPGTT TAGMETSKYW NWEDIDSLVS TDLKDPWDDS 300 DIKP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004505012.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004505012.1	0.0	dof zinc finger protein DOF1.4-like
TrEMBL	A0A1S2YHT2	0.0	A0A1S2YHT2_CICAR; dof zinc finger protein DOF1.4-like
STRING	XP_004505012.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5107	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66940.1	3e-24	Dof family protein