PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004505006.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NAC
Protein Properties Length: 364aa    MW: 41064.6 Da    PI: 7.6013
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004505006.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.82.1e-53151421128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeelvv+yLk+k+++ +l++  +i+e+d+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l++
  XP_004505006.1  15 LPPGFRFHPTDEELVVHYLKRKAASAPLPV-AIIAEIDLYKFDPWELPSKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTT 108
                     79****************************.88***************988899***************************************99 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++ +vg+kk Lvfy g+ pkg+kt+W+mheyrl
  XP_004505006.1 109 dGHMKVGVKKALVFYGGKPPKGVKTNWIMHEYRL 142
                     66678***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-6410188IPR003441NAC domain
PROSITE profilePS5100561.06115188IPR003441NAC domain
PfamPF023652.4E-2816142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDSTDSSSCS PHPHLPPGFR FHPTDEELVV HYLKRKAASA PLPVAIIAEI DLYKFDPWEL  60
PSKASFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPILTTDG HMKVGVKKAL  120
VFYGGKPPKG VKTNWIMHEY RLITDHNHNI HSYNATSKTP PLPADPPNLN KKNSLRLDDW  180
VLCRIYKKSN SSTMPRPPLM DQYDKELSMD HHHTMLPLTN MQQNNTKLPS SRSTSSYGLE  240
NDDNFFDGIL AADQHQHQHH HEEMQNGCGS HDINSKNDNN DSFPMKRALT ASSQFWNETG  300
SPGSSSSSKR FHGDLNSGNS NAEENNSFVS LLSQLPTTTT FHPNAILGDA VIRQQFQLPN  360
INWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A9e-751519220172NAC domain-containing protein 19
3swm_B9e-751519220172NAC domain-containing protein 19
3swm_C9e-751519220172NAC domain-containing protein 19
3swm_D9e-751519220172NAC domain-containing protein 19
3swp_A9e-751519220172NAC domain-containing protein 19
3swp_B9e-751519220172NAC domain-containing protein 19
3swp_C9e-751519220172NAC domain-containing protein 19
3swp_D9e-751519220172NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00058PBMTransfer from AT1G61110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004505006.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004505006.10.0NAC transcription factor 25
SwissprotQ8GY421e-110NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A1S2YHS70.0A0A1S2YHS7_CICAR; NAC transcription factor 25
STRINGXP_004505006.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16233498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-101NAC domain containing protein 25