PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004504883.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | bHLH | ||||||||
Protein Properties | Length: 310aa MW: 35519.5 Da PI: 6.0601 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.1 | 2.8e-12 | 135 | 181 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L l+P + +K++Ka++L A++Y+++Lq XP_004504883.2 135 YHIIAERKRREKLSERFIALSALVPGL-----QKMDKATVLGDAIKYLRQLQ 181 6999**********************9.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.253 | 131 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-17 | 134 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.6E-10 | 135 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.5E-18 | 136 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.67E-12 | 136 | 185 | No hit | No description |
SMART | SM00353 | 2.5E-15 | 137 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MENISFIRGF PDLEILEDPS FFLHQWHSNS IDESNSLPIA AAFGDTLQHH SYIYPNFNHR 60 TSVETAQTLE AQFISYPNLL SFDDSYQINQ FGLVKPKDEM VCPKNISKNS SDMISKGTLE 120 AKKIATRPKL SQPQYHIIAE RKRREKLSER FIALSALVPG LQKMDKATVL GDAIKYLRQL 180 QEKVRALEEE QNMKKNMESV VVVKKSQLRD DVENSSSESD GSFDEELPEI EARFCDRNVL 240 IRVHCEKSNG VLEKIIHEIE RLHLKVTNSS VMTFGSCALD ITIIAQMDME FCMTVKDFVR 300 NLRSAFTSFM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 3e-14 | 132 | 200 | 5 | 74 | Transcription factor MYC2 |
5gnj_B | 3e-14 | 132 | 200 | 5 | 74 | Transcription factor MYC2 |
5gnj_E | 3e-14 | 132 | 200 | 5 | 74 | Transcription factor MYC2 |
5gnj_F | 3e-14 | 132 | 200 | 5 | 74 | Transcription factor MYC2 |
5gnj_G | 3e-14 | 132 | 200 | 5 | 74 | Transcription factor MYC2 |
5gnj_I | 3e-14 | 132 | 200 | 5 | 74 | Transcription factor MYC2 |
5gnj_M | 3e-14 | 132 | 200 | 5 | 74 | Transcription factor MYC2 |
5gnj_N | 3e-14 | 132 | 200 | 5 | 74 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 139 | 144 | ERKRRE |
2 | 140 | 145 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004504883.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004504883.2 | 0.0 | transcription factor bHLH25-like | ||||
Swissprot | Q9T072 | 3e-60 | BH025_ARATH; Transcription factor bHLH25 | ||||
TrEMBL | A0A1S2YIA4 | 0.0 | A0A1S2YIA4_CICAR; transcription factor bHLH25-like | ||||
STRING | XP_004504883.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF455 | 34 | 164 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 6e-57 | bHLH family protein |