PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004504860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | GATA | ||||||||
Protein Properties | Length: 340aa MW: 37899 Da PI: 4.4952 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 45.8 | 8.5e-15 | 177 | 213 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg + Tp +Rrgp g+++LCnaCGl+++ kg+ XP_004504860.1 177 CQHCGIGEksTPAMRRGPAGPRSLCNACGLMWANKGT 213 ****865556************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 1.4E-7 | 37 | 72 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 13.422 | 37 | 72 | IPR010399 | Tify domain |
Pfam | PF06200 | 1.8E-10 | 41 | 71 | IPR010399 | Tify domain |
Pfam | PF06203 | 5.7E-15 | 108 | 149 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 12.759 | 108 | 150 | IPR010402 | CCT domain |
SMART | SM00401 | 4.8E-13 | 171 | 224 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 8.616 | 171 | 228 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.09E-11 | 173 | 225 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.5E-14 | 175 | 218 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 5.66E-14 | 176 | 219 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 177 | 204 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 9.0E-13 | 177 | 213 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MDTLNSCENE LMVVPMHCTN GASVSDEGGE ESQPIATTSR ASELTISFEG EVYVFPSVTP 60 QKVQAVLLLL GRQETPDSTP TSNFLVQQNC QDIWGINDPS RSSKLSRRIA SLVRFREKRK 120 ERCFEKKIRY TCRKEVAQRM HRKNGQFASL KEDYISPAEN QDSSNGTPCP ESTERRCQHC 180 GIGEKSTPAM RRGPAGPRSL CNACGLMWAN KGTLRDLSKA GRIAFEQNEL DTSTDIKPST 240 TEPGNSCTVQ DKEGSPQENK PVPIDVKQSP ETENEQYILE SAEAVTDNLS IQLENNVLDL 300 HEQDNTMEDF ADASGTEFEI PAGFDDQVDI DDSNMRTYWL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004504860.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004504860.1 | 0.0 | GATA transcription factor 19-like | ||||
Swissprot | Q8H1G0 | 1e-62 | GAT28_ARATH; GATA transcription factor 28 | ||||
TrEMBL | A0A1S2YHF6 | 0.0 | A0A1S2YHF6_CICAR; GATA transcription factor 19-like | ||||
STRING | XP_004504860.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3319 | 33 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51600.2 | 3e-54 | ZIM-LIKE 2 |