PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004504800.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family CAMTA
Protein Properties Length: 1081aa    MW: 121004 Da    PI: 5.4179
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004504800.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1182.83.9e-57241384118
            CG-1   4 ekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrc 98 
                      ++rwl++ ei++iL+n++ +++t e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktvrE+hekLKvg+v+vl+cyYah+een++fqrr+
  XP_004504800.1  24 AQHRWLRPAEICEILKNYQMFQITPEPPSRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVREAHEKLKVGSVDVLHCYYAHGEENENFQRRS 118
                     49********************************************************************************************* PP

            CG-1  99 ywlLeeelekivlvhylevk 118
                     yw+Le ++ +iv+vhyl+vk
  XP_004504800.1 119 YWMLEPDMMHIVFVHYLDVK 138
                     *****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143783.85817143IPR005559CG-1 DNA-binding domain
SMARTSM010766.5E-8220138IPR005559CG-1 DNA-binding domain
PfamPF038591.5E-5123137IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.103.8E-6483580IPR013783Immunoglobulin-like fold
PfamPF018336.2E-6494579IPR002909IPT domain
SuperFamilySSF812965.13E-17494579IPR014756Immunoglobulin E-set
SuperFamilySSF484032.18E-15669787IPR020683Ankyrin repeat-containing domain
CDDcd002041.72E-12683786No hitNo description
Gene3DG3DSA:1.25.40.202.9E-16685789IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.396694802IPR020683Ankyrin repeat-containing domain
PfamPF000230.0012727752IPR002110Ankyrin repeat
PROSITE profilePS5008810.179727759IPR002110Ankyrin repeat
SMARTSM002480.01727756IPR002110Ankyrin repeat
SMARTSM002481900766795IPR002110Ankyrin repeat
SMARTSM000159.9903925IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.261904933IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.25E-6905954IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF006120.0075906924IPR000048IQ motif, EF-hand binding site
SMARTSM000150.17926948IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.633927951IPR000048IQ motif, EF-hand binding site
PfamPF006128.8E-4929948IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1081 aa     Download sequence    Send to blast
MADRGASSYG LTPRLDIQQL QFEAQHRWLR PAEICEILKN YQMFQITPEP PSRPPSGSLF  60
LFDRKVLRYF RKDGHNWRKK KDGKTVREAH EKLKVGSVDV LHCYYAHGEE NENFQRRSYW  120
MLEPDMMHIV FVHYLDVKVN KTNIGASTDT NEVTSDSQNG SSVSSGFPAN YGNTPSGSTD  180
SMSPTSTLTS LCEDADSEDI HQTSSGFHAF HGSQNLGNGP PMDKIDARSN SSYLTHPLSG  240
GHGQLPISGT NYLPLVQGVK SNPSDITYIE GQRHIIASWD NVVEKSAGSH SDPSLVSTNS  300
IPSSSMENTI EQEQTVFTEV GGASQSLQSN WQIPFEENTG EFPKWSFTQS SSLEFGSDYT  360
TGLLGKENYN GSPETDPGLF SFNYEPEEQS VQQNLSMQHA HGQSQDALTT ECDEIHGEQS  420
INYALTMKRV FMDAEESLKK VDSFSRWISK ELAAVDDLHM QSSPGVSWGT DECGNVIDET  480
SLNLSLSQDQ LFSINDFSPK WAYAESEIEV LIIGTFLKSQ PEMATCNWSC MFGEVEVPAT  540
VLANGILCCQ APPHEIGRVP FYVTFSNRFA CSEVREFEYK EGYTRNVDLA DFVNSSTEML  600
HHLQLDELLS LNSVHPSNQV FEDDMEKRNL ILKLISLKEE EEYSSNEEPT VEMNISEYRL  660
NAHKFHRQVK EKLYSWLLHK VTETGKGPHV FGKDGQGVLH LVAALGYDWA IAPIVTAGVI  720
INFRDVNGWT ALHWAASCGR ERTVALLVSM GAAAGALTDP CPAFPSGRTP ADLASNNGHK  780
GISGFLAESL LTSHLESLTV DDVNKDGTKE NLGMKAVQTF SERIATPVFC GDVPDAICLK  840
DSLDAVRNAT QAADRIHQVY RMQSFQRKQL AQYEDDDEFG LLDQQALLLL ASKGRKSGHG  900
EGSANAAAIQ IQKKFRGWTK RKEFLFIRQR VVKIQALVRG HQVRKKYKPI IWSVGILEKV  960
VLRWRRKGSG LRGFRPDALN KVPNQPSNDP AKEDDYDFLK EGRKQSEERF KKALTRVKSM  1020
AQYPEARAQY RRLLNVVDDF RHTKQACNLS LINSEEAVDG VEDLIDIDML LDDNFLPIAF  1080
D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cxk_A8e-14494582991calmodulin binding transcription activator 1
2cxk_B8e-14494582991calmodulin binding transcription activator 1
2cxk_C8e-14494582991calmodulin binding transcription activator 1
2cxk_D8e-14494582991calmodulin binding transcription activator 1
2cxk_E8e-14494582991calmodulin binding transcription activator 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004504800.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004504800.10.0calmodulin-binding transcription activator 2-like isoform X1
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A1S2YI430.0A0A1S2YI43_CICAR; calmodulin-binding transcription activator 2-like isoform X1
STRINGXP_004504800.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74062642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]