PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004504770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C3H | ||||||||
Protein Properties | Length: 337aa MW: 36797.1 Da PI: 8.3443 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.5 | 8.1e-12 | 184 | 210 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt +Cr + ++G C+y ++C+FaHg+ XP_004504770.1 184 YKTDICRAWEESGNCRYNSKCQFAHGR 210 9************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 6.0E-16 | 181 | 214 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-9 | 182 | 214 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.1E-6 | 183 | 210 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.3E-9 | 184 | 210 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.338 | 184 | 211 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MENAMMNNGN MKVSKVRRTL NENVSPLQVE LDDKRGRYLQ STTMSPGFQP YAENIDTGSP 60 LARYFFAGSP ISGKSSESFT SPIFGSSKYR SARMQQYCAT SSGNSSFGSR GRLSLSPLSS 120 IENMEIKPLM SPPMYGTPVK VDEEVIVMDD IQVRPMSGGK NGRSSSSSSS RGSGSSSSSS 180 KSVYKTDICR AWEESGNCRY NSKCQFAHGR EELHPSRLMK SKSEAQTSKL SIRLGQGTYG 240 PNSRVVHEHP AVTESECALT GLITSQPASP EPYRSTHANS NIINDWSPLD DGIDVVLPNG 300 SDKVPSREEV DAYIFGLLNE PTTKRRLPVF VAICEGQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004504770.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004504769.1 | 0.0 | mRNA decay activator protein ZFP36L2-like | ||||
Refseq | XP_004504770.1 | 0.0 | mRNA decay activator protein ZFP36L2-like | ||||
TrEMBL | A0A1S2YH81 | 0.0 | A0A1S2YH81_CICAR; mRNA decay activator protein ZFP36L2-like | ||||
STRING | XP_004504769.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.2 | 3e-07 | C3H family protein |