PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004504556.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | TCP | ||||||||
Protein Properties | Length: 469aa MW: 52154.5 Da PI: 7.0988 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 119.7 | 3.5e-37 | 65 | 228 | 2 | 135 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................ssssase 72 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL++ a ai el+++ +s +a e XP_004504556.1 65 SGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKSASDAISELPSLnntfpndddtnqllqpsseqqqglDSADA-E 158 689*************************************************************88787666666655554444443311111.1 PP TCP 73 c.eaesssssasnsssg.kaaksaa.kskksqksaasalnlak....esrakarararertrekmriknk 135 + e++++++ ++n++++ + + s+ +s+ s++s+ s l+l++ sr karararert++++ ++n+ XP_004504556.1 159 MiENGENNNYHQNQNNQnNLCLSKSgCSSTSETSKGSGLSLSRcdirVSRVKARARARERTAKEKEKENN 228 13333333332222222544444444777777777777888777667888*********99988877755 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.1E-42 | 66 | 225 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.028 | 67 | 125 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.743 | 205 | 223 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence Send to blast |
MEEDEIQVQS QNQSCKFPRV GNNRNDQEED LEDGSMRRVG GCDGNTNRLN NWHHSSRIIR 60 VSRASGGKDR HSKVMTSKGL RDRRVRLSVT TAIQFYDLQD RLGYDQPSKA VEWLIKSASD 120 AISELPSLNN TFPNDDDTNQ LLQPSSEQQQ GLDSADAEMI ENGENNNYHQ NQNNQNNLCL 180 SKSGCSSTSE TSKGSGLSLS RCDIRVSRVK ARARARERTA KEKEKENNEC SHHHQQQQQH 240 QISQTASFTE LLTGGINNAV ANSPRGSSID EADLFNKARQ QQWNSAAPMD HYFNSVLLGP 300 SSSSSSRTHH QSLSQIQLGH SLHEQHHQSM SFSNNSGENQ NHQMQQQQQQ HQFSFIPDNN 360 DYNLNFKISS SLGLAGYNRG TLQSNSLSHL QRFSVSPIDH GSNVVVPFFM GGGGGGGASS 420 ATTASPSPSD ATPTMENNHQ IHHHHHQFSS VFDGSRLQLY SDHKGKPKN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 9e-24 | 72 | 126 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 9e-24 | 72 | 126 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00006 | PBM | Transfer from 493022 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004504556.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004504554.1 | 0.0 | transcription factor TCP2-like | ||||
Refseq | XP_004504555.1 | 0.0 | transcription factor TCP2-like | ||||
Refseq | XP_004504556.1 | 0.0 | transcription factor TCP2-like | ||||
Refseq | XP_027191536.1 | 0.0 | transcription factor TCP2-like | ||||
Refseq | XP_027191537.1 | 0.0 | transcription factor TCP2-like | ||||
TrEMBL | A0A1S2YHC4 | 0.0 | A0A1S2YHC4_CICAR; transcription factor TCP2-like | ||||
STRING | XP_004504554.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 2e-48 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |