PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004504543.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | ARF | ||||||||
Protein Properties | Length: 917aa MW: 102746 Da PI: 6.6454 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.4 | 2.7e-23 | 126 | 227 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++g W++k+i+r++++r++lt+GW+ Fv+a++L +gD+v+F +++ XP_004504543.1 126 FCKILTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHGIDWKFKHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 216 99*****************************8544444..48************************************************..899 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +++++++r+ XP_004504543.1 217 KNQMLLGIRRA 227 9999****997 PP | |||||||
2 | Auxin_resp | 120 | 1.9e-39 | 252 | 335 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld+vrWpnS+Wrs+k XP_004504543.1 252 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVK 335 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.32E-47 | 111 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.6E-41 | 117 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.14E-20 | 125 | 226 | No hit | No description |
SMART | SM01019 | 1.4E-23 | 126 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.4E-22 | 126 | 227 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.746 | 126 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.3E-34 | 252 | 335 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 2.29E-6 | 780 | 859 | No hit | No description |
Pfam | PF02309 | 1.1E-6 | 780 | 869 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 22.454 | 784 | 868 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 917 aa Download sequence Send to blast |
MKFSSAGFSP PPPEGEKRVL DSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAVSTNRE 60 VDTYIPNPSL PPQLICQLHN LTMHADTETD EVYAQMTLQP LNPEEQKEAY LPAELGAASK 120 QPTNYFCKIL TASDTSTHGG FSVPRRAAEK VFPPLDFSQQ PPAQELIARD LHGIDWKFKH 180 IFRGQPKRHL LTTGWSVFVS AKRLVAGDSV LFIWNEKNQM LLGIRRANRP QPMMPSSVLS 240 SDSMHLGLLA AAAHAAATNS RFTIFYNPRA SPSEFVIPLA KYVKAVYHTR VSVGMRFRML 300 FETEESSVRR YMGTITGISD LDSVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT 360 FPMYPSPFPL RLKRPWPPGL PSFHGLKDDD FGMNSPLLWL RDTDRGLQTL NFQGIGVNPW 420 MQPRLDPSMM HLQPDMYQAM AAAALQDMRT FDPSKQQHPG SLLQFQQPQN FTNGTATLMQ 480 NQMLQQSQPQ QAFPKNQENQ HPSQSQSQPQ TQSHFQQLLQ HQHSFTNQNH HHLQQQQQQQ 540 QQQQQQQQQQ KSQQQQQVVD HQQISSAVST MSQFVSTPQS QPTQPMQAIS SIGNQQNFTD 600 SNGNHVTTSI VSPLHNMLGS FPNDETSHLL NLPRQNSWVP VQSSTAWPSK RVAVDPLLSS 660 GGTNYVLPQV EQLGQSQTTM SQNAVILPPF PGRECAIEGS TDPQNHLLFG FNIEPSSHLV 720 YNEMPNLKRV NSNCDSSTAP FQSSTYLNTA GADSSLNPGM THGIGESDFL QTPENGGQGN 780 QPNRTFVKVY KSGSFGRSLD ITKFSNYHEL RSELARMFGL ERELEDPVRS GWQLVFVDQE 840 NDVLLLGDGP WPEFVNSVWC IKILSPQEVQ QMGNNGLELL NSAQNQRHSN GICDDYTGRE 900 DSRNLSTGLA TVGSLDY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-155 | 16 | 356 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004504543.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004504543.1 | 0.0 | auxin response factor 6 isoform X2 | ||||
Swissprot | A2X1A1 | 0.0 | ARFF_ORYSI; Auxin response factor 6 | ||||
Swissprot | Q6H6V4 | 0.0 | ARFF_ORYSJ; Auxin response factor 6 | ||||
TrEMBL | A0A1S2YGP3 | 0.0 | A0A1S2YGP3_CICAR; Auxin response factor | ||||
STRING | XP_004504542.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |
Publications ? help Back to Top | |||
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