PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_004504507.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 244aa MW: 28029.7 Da PI: 7.3064 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00026 | 80 | 102 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k F ++ L H++ H XP_004504507.1 80 FECQYCFKEFANSQALGGHQNAH 102 89******************988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 4.3E-5 | 75 | 106 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.07E-6 | 76 | 107 | No hit | No description |
PROSITE profile | PS50157 | 11.406 | 80 | 107 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 82 | 102 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 244 aa Download sequence Send to blast |
MEKEMCDISH TWDGENGNSV EKRLRLFGFE LNPTKNNEGL VKESNNEGDE SVNSSNSISS 60 GGEKIVEEKT STRGQDERKF ECQYCFKEFA NSQALGGHQN AHKKERMKKK RLQLQARKAS 120 INYYLQPFQT NNHHGSFANY HGNDTHNWFY DPSSYNNSEF SLCEESQISF KSNVHDTTNS 180 FVDQKSSWYS LPSHNPPSQQ DNCMFTFSNK DDRPFIFKPS SNQIHTKGLD LQLGLNLKSS 240 TKRT |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_004504507.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT140104 | 1e-133 | BT140104.1 Medicago truncatula clone JCVI-FLMt-13L10 unknown mRNA. | |||
GenBank | CT033763 | 1e-133 | CT033763.2 Medicago truncatula chromosome 5 clone mth2-139a2, COMPLETE SEQUENCE. | |||
GenBank | CT033767 | 1e-133 | CT033767.2 Medicago truncatula chromosome 5 clone mth2-175p8, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004504507.1 | 0.0 | zinc finger protein 5 | ||||
TrEMBL | A0A1S2YH84 | 0.0 | A0A1S2YH84_CICAR; zinc finger protein 5 | ||||
STRING | XP_004504507.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9594 | 26 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G10480.1 | 3e-16 | zinc finger protein 5 |